1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtctgcatatattacatcttcagctcatcttgtattcttctattacaaaacaactatgagctcaactaactttgttgtactctggaaaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGTCACTTGACAAGTCAAAGGTATGGAAGCTTATGGAGATAACTGAGTCAA
species | Zea mays |
transcript | GRMZM2G030422_T02 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGEST: gi|211268556|gb|FL032964.1|FL032964
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: CTGCAGCAAGCAGTTCAGGAGCTGATGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGEST: gi|32793640|gb|CD945876.1|CD945876
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: GTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGEST: gi|22490238|gb|BU050161.1|BU050161
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAA-CCTAEST: gi|211270985|gb|FL032966.1|FL032966
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTA
EST: CTGCAGCAAGCAGTTCAGGAGCTGATGCTCCGTCAGCTATAACTGCAATG AATGGTGGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAEST: gi|31360139|gb|CD444496.1|CD444496
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTG-ATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGA
EST: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAAAAGTTTGGTTGATGTAAAACCTAAAATAGCTGATGAGEST: gi|87152395|gb|DY397184.1|DY397184
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGEST: gi|211270984|gb|FL032965.1|FL032965
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTANAATAGCTGATGAGEST: gi|19058659|gb|BM737326.1|BM737326
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: CAGCAAGCAAG-TCAAGGAAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGEST: gi|22520900|gb|BU079711.1|BU079711
genomic: CAGCAAGC-AGTTC-AGG-AGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: CTGCAGCAAGCAGTTCAGGAGCTGGGGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGEST: gi|31360482|gb|CD444839.1|CD444839
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
EST: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG AATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
genomic: CTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATGgtctgcatat ... aaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
attacaaaacaactatgagctcaactaactttgttgtactctggaaaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGTCACTTGACAAGTCAAAGGTATGGAAGCTTATGGAGATAACTGAGTCAA
aactaac putative branch site (score: 206)
aaaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgcatatattacatcttcagctcatcttgtattcttctattacaaaacaactatgagctcaactaactttgttgtactctggaaaatgaacagAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAGTCACTTGACAAGTCAAAGGTATGGAAGCTTATGGAGATAACTGAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT