1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...aagtactttataagctttgtttaagcttttggctttatctggttagtgcatgaaacctaactatttacaccttactgatgatcaatgtggatttttacagTGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCGCCTATTTATCTTTGTAATTGGAGGTGCTACTCGGTCTGAG
species | Zea mays |
transcript | GRMZM2G012942_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATAGGTGGCACATGGGCTAGACCTCGGAACTCCGATGATGGTTATTCGAG TGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCGEST: gi|78119730|gb|DV538114.1|DV538114
genomic: ATAGGTGGCACATGGGCTAGACCTCGGAACTCCGATGATGGTTATTCGAGgttagtaaag ... atttttacagTGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCG
EST: ATAGGTGGCACATGGGCTAGACCTCGGAACTCCGATGATGGTTATTCGAG TGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCGEST: gi|211059327|gb|FL135173.1|FL135173
genomic: ATAGGTGGCACATGGGCTAGACCTCGGAACTCCGATGATGGTTATTCGAGgttagtaaag ... atttttacagTGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCG
EST: ATAGGTGGCACATGGGCTAGACCTCGGAACTCTGATGATGGTTATTCGAG TGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCG
genomic: ATAGGTGGCACATGGGCTAGACCTCGGAACTCCGATGATGGTTATTCGAGgttagtaaag ... atttttacagTGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCG
gtgcatgaaacctaactatttacaccttactgatgatcaatgtggatttttacagTGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCGCCTATTTATCTTTGTAATTGGAGGTGCTACTCGGTCTGAG
tactgat putative branch site (score: 53)
tttttac putative PPT
taactattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtactttataagctttgtttaagcttttggctttatctggttagtgcatgaaacctaactatttacaccttactgatgatcaatgtggatttttacagTGACTCTGTACTGAAGCATGCATCAAGTGACTTCAGAAAGTTGGGCCAGCGCCTATTTATCTTTGTAATTGGAGGTGCTACTCGGTCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtg