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gtaagttcacaaagacaagatgtttccattcttaacaaattatcttttacagaatctaatactagtcaaattgtgtggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAGGCCATTCTTCTGTCTGCAACAGAGGCTGCCGAGATGATCCTCAGGGTCG
species | Zea mays |
transcript | EF517601.1_FGT012 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAGEST: gi|211238232|gb|FL378073.1|FL378073
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAG
EST: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GKTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAGEST: gi|67015042|gb|CO443791.1|CO443791
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAG
EST: AGCACCACATAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGGGGACATGCAANAGCTAGGGATTNCA-GAGTCGTTCAAGGTGA-GCEST: gi|28931187|gb|CB334548.1|CB334548
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGG-ACATGCAAAAGCTAGGGATT-CAAGAGTCGTTCAAGGTGAAGC
EST: AACACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGGGACATGCAAAAGCTAGGGATTEST: gi|9952521|gb|BE639104.1|BE639104
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAGCTAGGGATT
EST: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGTGACATGCAAAAGTTGGGGATTCAAGEST: gi|78110436|gb|DV528848.1|DV528848
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAG
EST: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGGGACATGCAAAEST: gi|166411861|gb|EG176861.1|EG176861
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAA
EST: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGTGACATGCAAAAGEST: gi|31364541|gb|CD448896.1|CD448896
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAG
EST: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGTGACATGCAAAAGTTGGGGATTCAAGEST: gi|84976683|gb|DW475105.1|DW475105
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAG
EST: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGTGACATGCAAAAGTTGGGGATTCAAGAGTCGTTCAAGGTGAAGCAGEST: gi|67010604|gb|CO439353.1|CO439353
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAG
EST: AGCACCACANAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACT GTTGGGGACATGCAAAAGCTANGGATTCAAGAGTCGTTCAAGGTGAAGCAG
genomic: AGCACCACAAAGAGAACTCCACTGCTGGAATTGATGTCATCACAGGCACTgtaagttcac ... tggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAG
cttaacaaattatcttttacagaatctaatactagtcaaattgtgtggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAGGCCATTCTTCTGTCTGCAACAGAGGCTGCCGAGATGATCCTCAGGGTCG
aaattatcttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcacaaagacaagatgtttccattcttaacaaattatcttttacagaatctaatactagtcaaattgtgtggtccgcagGTTGGGGACATGCAAAAGCTAGGGATTCAAGAGTCGTTCAAGGTGAAGCAGGCCATTCTTCTGTCTGCAACAGAGGCTGCCGAGATGATCCTCAGGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG