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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttgtaattcactatttgtttcaagtgtagcatcagtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATACTGTTATGTGGATAGGAATAATCCTGTAGGTTTGATGCTTCTTTCTGAGG

Basic information

species Zea mays
transcript GRMZM5G831712_T01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G831712_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 3'ss of exon 17
----gttcgttgta-attcactatttgtttcaagtgtagcatcagtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATACTGTTATGTGGATAGGAATAATCCTGTAGGTTTGATGCTTCTTTCTGAGG
    | || ||||  | |   ||  || ||||| |||||||   |  ||||  |||||||||    |||| |  ||     |   | ||   |  |||||| || ||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||| ||||| || ||||||||||||||||| ||||
gtttgctctttgttcacttcataaatggttcaactgtagcactggcaaaag-attggttgaatttgattaagctat-----tttcctttcaatcaacagTTTGGGAAAGGCCTCTACTTTGCAGATTTAGTAAGCAAGAGTGCACAATATTGTTACGTGGATAGGAAGAATCCAGTTGGTTTGATGCTTCTTTCCGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61119038|gb|DN559999.1|DN559999
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60351643|gb|DN218616.1|DN218616
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60394841|gb|DN227710.1|DN227710
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|94475980|gb|EB704938.1|EB704938
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60345790|gb|DN212763.1|DN212763
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|211088584|gb|FL093443.1|FL093443
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|60350335|gb|DN217308.1|DN217308
EST:     GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: GTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
EST: gi|94475979|gb|EB704937.1|EB704937
EST:     AAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG                         TTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC
genomic: AAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta ... tctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacagTTCGGCAAAGGCCTCTACTTTGCAGATCTAGTAAGCAAGAGCGCACAATACTGTTATGTGGATAGGAATAATCCTGTAGGTTTGATGCTTCTTTCTGAGG
                                  tgctcctcgtttcttt  CT-rich tract
             ttgaaaacaattat  TA-rich tract