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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcaatacaagtagaccttttctgttctgttggatcaaatgctttgccccttatcttttagatttaaacttttttttttctatatttttattcatagtgaatttagatgaacaacccaagctgtacatgtatattgtaggacatttggtgctatgatttgtttttaatgaatgcagGGACCTGATGACTTACACAGATGACAATACACCTTTAGTACCAACTGATTTAGATGTTCTATCAGAAACCCAGTTATCAGAAACAAATGAGCCATTATCT

Basic information

species Zea mays
transcript GRMZM2G459702_T03
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166512570|gb|EG041891.1|EG041891
EST:     CGCCCTATTGATTTTGAATG                         GGACCTGATGACTTACACAGATGACAATACACCTTTAGTACCAACTGATTT
genomic: CGCCCTATTGATTTTGAATGgtacatgcaa ... atgaatgcagGGACCTGATGACTTACACAGATGACAATACACCTTTAGTACCAACTGATTT
EST: gi|29543856|gb|CB604236.1|CB604236
EST:     ATGAAAGGAGGTTACCGCCGCGTACTCCAACGCCCTATTGATTTTGAATG                         GGACCTGATGACTTACACAGATGACAATACACCTTTAGTACCAACTGATTT
genomic: ATGAAAGGAGGTTACCGCCGCGTACTCCAACGCCCTATTGATTTTGAATGgtacatgcaa ... atgaatgcagGGACCTGATGACTTACACAGATGACAATACACCTTTAGTACCAACTGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacatgtatattgtaggacatttggtgctatgatttgtttttaatgaatgcagGGACCTGATGACTTACACAGATGACAATACACCTTTAGTACCAACTGATTTAGATGTTCTATCAGAAACCCAGTTATCAGAAACAAATGAGCCATTATCT
                                        ttttaat  putative branch site (score: 3)
                              tatgatttgtttttaa  TA-rich tract