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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatacagagatagttggagaacgatgttcattgtgaaacaagtaaactaagcaaacctgcttgtatgtgtggtgaaaaaagttgtttgattttcattcagGTAAAATCAAACGCTGTTAGAGCTCTTGGTTATCTTTCAAGATTTATCAGATTCAATTACCACGCCGGCACAATAAATGACCCAAGGTAG

Basic information

species Zea mays
transcript GRMZM2G446895_T03
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446895_T03 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os08g05670.1 (Oryza sativa), 3'ss of exon 8
---------------------------------------------------------------gatacagagatagttggagaacgatgttcattgtgaaacaagtaaactaagcaaacctgcttgtatgtgtggtgaaaaaag---------------ttgtttgattttcattcagGTAAAATCAAACGCTGTTAGAGCTCTTGGTTATCTTTCAAGATTTATCAGATTCAATTACCACGCCGGCACAATAAATGACCCAAGGTAG
                                                               |          |||||||||  |   || ||| | ||| ||       ||     | |   ||| |||    |||  ||                 |  ||| |||| |||||||||||| |||||||||||||| |||||||| || |||| ||||||||||||||||||| | ||  | | |||| |  ||||||||||    
gtggttttctgaatctagttgtgatgcttttgtttcaattgttcactggccatgtatattttaggggtgcttgcagttggagactgcatttaattttaaaagaaaggggtgaaagctgcttctatgtctgtaaaatgactaactgatgttttttttttctcattttatttgcattcagGTAAAGTCAAACGCTGTTAGGGCTCTTGGATACCTTTTAAGATTTATCAGATTCAATAATCATTCTGACACAGTTGATGACCCAAG----

upper sequence: GRMZM2G446895_T03 (Zea mays), 3'ss of exon 17
lower sequence: Vv02s0025g03050.t01 (Vitis vinifera), 3'ss of exon 6
gatacagagatagttggagaacgatgttcattgtgaaacaagtaaactaagcaaacctgcttgtatgtgtggtgaaaaaagttgtttgattttca---ttcagGTAAAATCAAACGCTGTTAGAGCTCTTGGTTATCTTTCAAGATTTATCAGATTCAATTACCACGCCGGCACAATAAATGACCCAAGGTAG----------
  | || || |  |   | |  | | |   ||||      | |    |   || |  || | || | |    |        || | || ||||     || || |||||||||| ||||| |||||||||||  |||||||||||||| |    |  |     |  || || |      |  | |||  | |           
tgttcatagct--tctcatagtgttctcttttgtagtcttactttcattctcatatttg-tagtttattgaattgttctctttttgtgttttttcgtttttagATAAAATCAAATGCTGTGAGAGCTCTTGGGAATCTTTCAAGATTTCTTCAGTATAGAAGTCCAGCTGGTATCCATGACAAGCCAGTGAATTGTGCGGGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaagcaaacctgcttgtatgtgtggtgaaaaaagttgtttgattttcattcagGTAAAATCAAACGCTGTTAGAGCTCTTGGTTATCTTTCAAGATTTATCAGATTCAATTACCACGCCGGCACAATAAATGACCCAAGGTAG
                                      gtttgat  putative branch site (score: 5)
                                            ttttcattc  CT-rich tract
                             aaaaaagtt  TA-rich tract