Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttaattctttaacccaaatctagataatttcctcgattatgtgaagcaacagttttccatatgttgtagatgtagttatttgctctgttatcaattgctgatttggattcgaaaagaagaagaatgcatcattattctttttgttttgtcaaaaaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAACAGTAGTCAAAGGCGAATATTTCTCGTCAGCCCAGATTCTCTTCGTCAGC

Basic information

species Zea mays
transcript GRMZM2G426275_T04
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T04 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 3'ss of exon 17
gtgtttaattctttaacccaaatctagataatttcctcgattatgtgaagcaacagttttccatatgttgtagatgtagttatttgctctgttatcaattgctgatttggattcgaaaagaagaagaatgcatcattattctttttgttttgtcaaaaaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAACAGTAGTCAAAGGCGAATATTTCTCGTCAGCCCAGATTCTCTTCGTCAGC
                                            |  |  || |||        ||| | || |       |||| || ||   |    || |  ||| |  |      || ||   ||| ||   | || | | ||||||             ||||||||||| |||||||| ||||| |||||||| || |||||||||||||| ||||||| ||| |||||||  |||||  | || ||||| ||  ||||||
--------------------------------------------gatagacatcagccccgtgaatggtctata-------attttctttggacttctctgtttttttagtgt----gtgatgattcatgtatgtctgttttctctgtttt------------tcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAGAGTAGTCGAAGACGAATATACCTCGTTGGTCCGGATTCCCTCAGTCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082838|gb|EE172062.2|EE172062
EST:     TAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: TAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|76011179|gb|DT938349.1|DT938349
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|8318693|gb|BE025258.1|BE025258
EST:     AAGGTTTTGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|89757376|gb|DY687005.1|DY687005
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|78123462|gb|DV541846.1|DV541846
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|16379214|gb|BI992824.1|BI992824
EST:     GGTTTCGAGCAGATAGCTCGTCAATTTGGAGTATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACACC
genomic: GGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|32789075|gb|CD941311.1|CD941311
EST:     AAGGTTTTGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|60342158|gb|DN209131.1|DN209131
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|71439956|gb|DR821006.1|DR821006
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|86471523|gb|DY237893.1|DY237893
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|148986616|gb|EE030387.2|EE030387
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
EST: gi|76285203|gb|DV024771.1|DV024771
EST:     AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAG                         GATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC
genomic: AAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaatt ... aaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgaaaagaagaagaatgcatcattattctttttgttttgtcaaaaaaaatccagGATGGCATCCCAAGAACGGCTTACAAAGGAGTGGTGGTCTTCCGGTACAACAGTAGTCAAAGGCGAATATTTCTCGTCAGCCCAGATTCTCTTCGTCAGC
                      attattctttttgttt  TA-rich tract