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gtttgcaacatgcttatgaagtgatgtttggattatgtattgataatgtgcatgaggtttgtttatactgacattctcttatctttgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGTTGGAAGATGAGGATGACGAGAAAACAAAG
species | Zea mays |
transcript | GRMZM2G420865_T02 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAAGGAGAAAAGGAGACGAGAACATGAG AAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGEST: gi|78090028|gb|DV518402.1|DV518402
genomic: AAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
EST: AGAAGGCCGAAGACCTTCGTTTAAAGGAGAAAAGGAGACGAGAACATGAG AAGAATTTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGEST: gi|37373944|gb|CF623297.1|CF623297
genomic: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
EST: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG AAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGEST: gi|60396007|gb|DN228877.1|DN228877
genomic: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
EST: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG AAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGEST: gi|37398106|gb|CF636362.1|CF636362
genomic: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
EST: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG AAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGEST: gi|40337352|gb|CK371422.1|CK371422
genomic: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
EST: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG AAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGEST: gi|60344195|gb|DN211168.1|DN211168
genomic: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
EST: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG AAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGEST: gi|60341880|gb|DN208853.1|DN208853
genomic: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
EST: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG AAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
genomic: AGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAGgtttgcaaca ... tgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATG
tgataatgtgcatgaggtttgtttatactgacattctcttatctttgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGTTGGAAGATGAGGATGACGAGAAAACAAAG
tactgac putative branch site (score: 1)
ttctcttatctttgtt CT-rich tract
ttatctttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcaacatgcttatgaagtgatgtttggattatgtattgataatgtgcatgaggtttgtttatactgacattctcttatctttgttttacagAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCCAGCGTGAGATGTTGGAAGATGAGGATGACGAGAAAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG