Sequence
atgc intronic sequence ATGC exonic sequencegtatgttaccctcttaccctatctctttgcacatattccatagtcctgtttgctcgacacctattggttaattaattcaataaaagttctatattttttaaacacatggttgtcttgtgttttgcttttgaaactacttcctggaataaatgcagAAATCTCCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGTGCTCCAATATCTGCTTATGTTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G408305_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g15540.1 (Oryza sativa), 3'ss of exon 4
gtatgttaccctcttaccctatctctttgcacatattccatagtcctgtttgctcgacacctattggttaattaattcaataaaagttctatattttttaaacacatggttgtcttg--tgttttgcttttgaaactacttcctggaataaatgcagAAATCTCCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGTGCTCCAATATCTGCTTATGTTGAT
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------------------------------------------------------------------gtgagtaaactctacacatacacacaatctgaaacctatagaagtttctgagttactttagttaacaaatttctttctggtatgagtgcagAAATCTCCTCATCCTCCCCAAGATAAGACTATGGTTGTTGCCACTTTAGCTGAGGTCGCTCAGGGAATGGGAGCTCCAATCTCTGCTTATGTTGAT
upper sequence: GRMZM2G408305_T03 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 15
gtatgttaccctcttaccctatctctttgcacatattccatagtcctgtttgctcgacacctattggttaattaattcaataaaagttctatattttttaaacacatggttgtcttgtgttttgcttttgaaactacttcctggaataaatgcagAAATCTCCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGTGCTCCAATATCTGCTTATGTTGAT
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------------------------------------------------------------------gtgagttcgca-accaataacttttactgttaggaataaatcacaaattaatatcctcattttgaaa-----------------tgcagAAATCTTCTCGTCCTCCTCAAGATAGGACTATGGTAGTTGCCTGCCTAGCTGAAGTTGCTCAGAACATGGGTTCTCCTATTGCAAGCTATGTTGAT
upper sequence: GRMZM2G408305_T03 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 15
gtatgttaccctcttaccctatctctttgcacatattccatagtcctgtttgctcgacacctattggttaattaattcaataaaagttctatattttttaaacacatggttgtcttgtgttttgcttttgaaactacttcctggaataaatgcagAAATCTCCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGTGCTCCAATATCTGCTTATGTTGAT
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------------------------------------------------------------------gtgagttcacaaccaataacttttat-tgttaggaataaatcacaaattaatatcctcactttgaaa-----------------tgcagAAATCTTCTCGTCCTCCTCAAGATAGGACTATGGTAGTTGCCTGCCTTGCTGAAGTTGCTCAGAACATGGGTTTTCCTATTGCAAGCTATGTTGAT
upper sequence: GRMZM2G408305_T03 (Zea mays), 3'ss of exon 11
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 15
gtatgttaccctcttaccctatctctttgcacatattccatagtcctgtttgctcgacacctattggttaattaattcaataaaagttctatatttttta--aacacatggttgtcttgtgttttgcttttgaaactacttcctggaataaatgcagAAATCTCCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGTGCTCCAATATCTGCTTATGTTGAT
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-------------------------------------------------gtgagttgcaactagttgcctctgatatt--tgaaatctcaatcctttttgtcatttcatggttgtagtgtgcttgtcactc--atttaattattggag--agtgcagAAATCCTCACGTCCACCGCAAGATAGGACCATGGTGGTTGCATGCCTTGCAGAGGTTGCTCAGGATATGGGTGCTCCAATTGCAGGATACGTTGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|40334468|gb|CK368538.1|CK368538EST: ATTTTGATCCCACATTTGCAAAATTATTTGATCCGTTGATGAAATTTGCT AAATCTCCCCTTCCTCCC
genomic: ATTTTGATCCCATATTTGCAAAATTATTTGATCCGTTGATGAAATTTGCTgtatgttacc ... ataaatgcagAAATCTCCCCATCCTCCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacacatggttgtcttgtgttttgcttttgaaactacttcctggaataaatgcagAAATCTCCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGTGCTCCAATATCTGCTTATGTTGAT
aataaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttaccctcttaccctatctctttgcacatattccatagtcctgtttgctcgacacctattggttaattaattcaataaaagttctatattttttaaacacatggttgtcttgtgttttgcttttgaaactacttcctggaataaatgcagAAATCTCCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGTGCTCCAATATCTGCTTATGTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA