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...tagcggctattctaagttataacttcactgtatgttttttgcatttactctgcactattctcgatgtactctgtaattttggcttgtgttttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTATCTGGCGTCTGTCAGTGAAGATTCTGTCAGGGTGTGGTCATTTACCTCAG
species | Zea mays |
transcript | GRMZM2G361398_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTATEST: gi|24766351|gb|CA401505.1|CA401505
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTATEST: gi|60351102|gb|DN218075.1|DN218075
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTATEST: gi|78109474|gb|DV527890.1|DV527890
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTATEST: gi|31358706|gb|CD443063.1|CD443063
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
tactctgcactattctcgatgtactctgtaattttggcttgtgttttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTATCTGGCGTCTGTCAGTGAAGATTCTGTCAGGGTGTGGTCATTTACCTCAG
tgtttttt CT-rich tract
ttttttatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcggctattctaagttataacttcactgtatgttttttgcatttactctgcactattctcgatgtactctgtaattttggcttgtgttttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTATCTGGCGTCTGTCAGTGAAGATTCTGTCAGGGTGTGGTCATTTACCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-agcggct
- - - - - - - - - - - - - -ctgtatg
- - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg