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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtcctgttacacttgctcttcttagatctatattttgttttgcaaaattcagggtatctgattttatgggcttattcagGTAACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATGATGATACTTGACACACATGGTGAGGTTTTCATTTGGATTGGTCAGTGCG

Basic information

species Zea mays
transcript GRMZM2G180988_T02
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180988_T02 (Zea mays), 3'ss of exon 17
lower sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 17
-------------------------gtcggtcctgttacacttgctcttcttagatctatattttgttttgcaaaattcagggtatctgattttatgggcttattcagGTAACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATGATGATACTTGACACACATGGTGAGGTTTTCATTTGGATTGGTCAGTGCG
                          |  |  || | |||||  ||  |   | |  | |     || ||      |||    | | |  || ||| |   | ||||||||   ||| | | ||||||||||||||||||||||||||| ||||| ||  |||| |||||||| ||    || || ||  |||||||||||||||| |
gtgagtttgtgactgcaacttcattatgtggactttcacact-actgctaggaaacttgtcagcagtgtt--tgtcttctaaatctattcttatattgtactcttcagGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACAGAAGATATCCTGATCCTTGACACGCACACAGAAGTGTTTGTTTGGATTGGTCAGTGTG

upper sequence: GRMZM2G180988_T02 (Zea mays), 3'ss of exon 17
lower sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 16
-------------------------gtcggtcctgttacacttgctcttcttagatctatattttgttttgcaaaattcagggtatctgattttatgggcttattcagGTAACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATGATGATACTTGACACACATGGTGAGGTTTTCATTTGGATTGGTCAGTGCG
                          |  |  ||   ||||| |||  |   | | || |     || |       |||    | | |  || ||| |   | ||||||||   ||| | | ||||||||||||||||||||||||||| || || ||  |||| ||||||||||| |  || || ||  | |||||||||||||| |
gtgagtttgtgactgcaacttcattatgtgaacttccacact-gctgctaggaaacctgtcagcagtgta--tgtcttctaaatctattcttatattgtactcttcagGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACAGAGGATATCCTGATCCTTGACACACACGCAGAAGTGTTTGTATGGATTGGTCAGTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctatattttgttttgcaaaattcagggtatctgattttatgggcttattcagGTAACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATGATGATACTTGACACACATGGTGAGGTTTTCATTTGGATTGGTCAGTGCG
                               atctgat  putative branch site (score: 4)
                                              cttattc  putative PPT
     atattttgtttt  TA-rich tract