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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggagtactacctcccatccgcaaggccatttattcaccctcaataatttctaattttgacaacgtattaacatgaatgaaaatgtctaattttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATACCCACAGTACATGAACGGGCCCAACGGCGACAACGCACAGCCAGGCCAGG

Basic information

species Zea mays
transcript GRMZM2G168449_T02
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32870722|gb|CF010404.1|CF010404
EST:     CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG                         GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: gi|87154999|gb|DY399788.1|DY399788
EST:     CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG                         GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: gi|7135944|gb|AW498346.1|AW498346
EST:     CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG                         GCCGGGGCGCAGAGCACAAACCCATTCTCCGATGAGAGCGTTCAGGGATAC
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: gi|78112306|gb|DV530700.1|DV530700
EST:     CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG                         GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: gi|78112307|gb|DV530701.1|DV530701
EST:     CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG                         GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
EST: gi|50327677|gb|CO522803.1|CO522803
EST:     CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAG                         GCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC
genomic: CCAACCAGACGACGGAGCTGGACCTTTTCCAAGACCTGCAGTTGCCTCAGgtggagtact ... ttttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttctaattttgacaacgtattaacatgaatgaaaatgtctaattttgagcagGCCGGGGCGCAGAGCACAAACCCATTCTCTGATGAGAGCGTTCAGGGATACCCACAGTACATGAACGGGCCCAACGGCGACAACGCACAGCCAGGCCAGG
                                  aaaatgtctaatttt  TA-rich tract