Sequence
atgc intronic sequence ATGC exonic sequencegtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttatataaacagtaaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 3'ss of exon 19
----------------------------------------------------------------------------------------------------gtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttat------ataaacagt--aaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
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gtaatcttgtgaagttgtatggttgctgccttgaaggcaaacatccactgctggttttatgagtacttggagaatggaagccttgataaagcactatttggtacaagtt-atttcagtttgatatggctgagattctgtgaactcagatttattattagtctatagagagctaaaaagcttaaccctt-catttgcagGAACTGAGAAATTGAACATTGACTGGCCAGCACGTTTTGAGATATGCTTAGGCATTGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCCAGCATCCGTGT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 3'ss of exon 21
gtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttata---taaacagtaaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
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gtacaagct-atttcagtttgatgcaattgggattttataa-tttaggtttatcatagtctgtaacctaaaatctaaaccctc-catttgcagGAATTGAGAAATTGAACATAGATTGGCCAGCACGTTTTGACATATGCTTAGGCATTGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCCAGCATCCGTGT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os04g52606.2 (Oryza sativa), 3'ss of exon 18
gtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttata---taaacag---taaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
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gtacaagtt-atttcaatttgatgcaactggtattctgagaacttggatttatcgtagtctatagagacctaaaagttcaat-cctacatttgcagGAACTGGGAAGTTGAACATAGATTGGCCAGCACGCTTTGGGATATGCTTAGGCATTGCAAGAGGTCTGGCCTATCTTCATGAAGAGTCCAGTATCCGTGT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os04g52640.1 (Oryza sativa), 3'ss of exon 21
gtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttatataaaca-gtaaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
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gtacaa-tttatttcattttgatgcaactgggattctgataatttattgttagtagatagaaacataaaagttcaat-cctgtatttctagGAACTGAGAAATTACATATAGGGTGGCCAGCACGCTTTGAAATATGCTTGGGCATTGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCAAGCATCCGTGT
upper sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 3'ss of exon 17
gtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttata---taaacagtaaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
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gtacgagca-atttcagtttgatgcaactgatattttcataattcaggtttatcatagtctacaacgtaaaagcttaaccctt-catttgcagGAACTGAGAAATTGACCATAGATTGGCCAGCACGTTTTGAGATATGCCTAGGCATTGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCCAGCATCTGTGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaggagttcaggtttcttatataaacagtaaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
tttcttatataaacag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttatataaacagtaaaacttaaacatttatatttgcagGAAACGGGAAACTGAACCTAGACTGGCCAACACGCTTTGAGATATGCTTAGGCATTGCAAGAGGCCTCGCTTATCTCCATGAAGAGTCTAGCATCCGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA