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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgggagggagtagatctatgcacctgctattttacatatgactctagtggttatcaaagatgtgcttagctattaatgagaatcaaatcctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATAGGGAAGTACTGTGATGTAACACTTATGTCACTGGCATATGCCGGGACAG

Basic information

species Zea mays
transcript GRMZM2G155384_T02
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T03 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 3'ss of exon 17
gatgggagggagtagatctatgcacctgctattttacatatgactcta-gtggttatcaaagatgtgcttagctattaa---tgagaatcaaatcctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATAGGGAAGTACTGTGATGTAACACTTATGTCACTGGCATATGCCGGGACAG
  |       ||  |  || ||   ||    | ||   |||| || || |  |   |   ||||     || || |||    ||     ||| | | ||||||||| ||||| |||||||| ||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| || ||||
--tatactatagctg-cctttgtttctaac-tgttgtttatggctttatgcagcccttttagataaatgtaccttttatgattgtttggcaatttccatttcagGAGAGTGTAGAGGCTACGGCAGAAGTTTCTAAAACATTTGATGAGAAGATAAGAAAGTACTGTGATGTAACACTTATGTCACTAGCATATGCTGGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32940220|gb|CF045039.1|CF045039
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|18659836|gb|BM500547.1|BM500547
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32943723|gb|CF048542.1|CF048542
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32929231|gb|CF034043.1|CF034043
EST:     TATACGGTTGCTTCCTGAAGCAGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TATACGGTTGCTTCCTGTTGC-GCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32848175|gb|CD987856.1|CD987856
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCACAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32928692|gb|CF033504.1|CF033504
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtggttatcaaagatgtgcttagctattaatgagaatcaaatcctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATAGGGAAGTACTGTGATGTAACACTTATGTCACTGGCATATGCCGGGACAG
                           tattaat  putative branch site (score: 2)
                                            tcctatttc  putative PPT
                           tattaatga  TA-rich tract