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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgttacagctttcaatattatagctattcatagattcatttcttgttactgaaagttttgagcgtgtctccagttcccttaccttgcattgatgttatgacatatttatgattgtatactgtttttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTCATCTGACTATGTCGCCAACGG

Basic information

species Zea mays
transcript GRMZM2G138125_T01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5525254|gb|AI861093.1|AI861093
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|32943511|gb|CF048330.1|CF048330
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|67034321|gb|CO462871.1|CO462871
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|29130029|gb|CB380733.1|CB380733
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|71419756|gb|DR804887.1|DR804887
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|71419751|gb|DR804886.1|DR804886
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|31909601|gb|CD651000.1|CD651000
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|60355698|gb|DN222671.1|DN222671
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|60394842|gb|DN227711.1|DN227711
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccttgcattgatgttatgacatatttatgattgtatactgtttttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTCATCTGACTATGTCGCCAACGG
                                       ctgttttt  CT-rich tract
                      atatttatgattgtat  TA-rich tract