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gtcggtcatttagtaactaaacatcattaggcaagttttcattcttgtttgtcataatcagtgatggttccgatctgttcttttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGCGTTGGTGTTATACTGCATGGACTTTTTGGATCCCAACCAAATGTCAGCT
species | Zea mays |
transcript | GRMZM2G135256_T03 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAG AGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGCEST: gi|32931245|gb|CF036057.1|CF036057
genomic: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAGgtcggtcatt ... ttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGC
EST: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAG AGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGCEST: gi|149106587|gb|EE188480.2|EE188480
genomic: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAGgtcggtcatt ... ttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGC
EST: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAG AGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGCEST: gi|94476790|gb|EB705748.1|EB705748
genomic: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAGgtcggtcatt ... ttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGC
EST: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAG AGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGCEST: gi|32837858|gb|CD977536.1|CD977536
genomic: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAGgtcggtcatt ... ttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGC
EST: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAG AGAATTGGTATGGGACAAAATTNNNCCTGGNTCATTGATTCTGCTATTTGCEST: gi|60394264|gb|DN227134.1|DN227134
genomic: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAGgtcggtcatt ... ttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGC
EST: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAG AGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGC
genomic: ATCTTCTAAGCACACTCATGTTTGTGCCTTCACTTGTTGCCTGGCTACAGgtcggtcatt ... ttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGC
ttcattcttgtttgtcataatcagtgatggttccgatctgttcttttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGCGTTGGTGTTATACTGCATGGACTTTTTGGATCCCAACCAAATGTCAGCT
tctgttctttt CT-rich tract
tcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtcatttagtaactaaacatcattaggcaagttttcattcttgtttgtcataatcagtgatggttccgatctgttcttttgtgtgcagAGAATTGGTATGGGACAAAATTTTCCCTGGTTCATTGATTCTGCTATTTGCGTTGGTGTTATACTGCATGGACTTTTTGGATCCCAACCAAATGTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT