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gtgcgtgtcttatctgttttaattgggctggagcaagcaagatttatagggtttagtttgattgtctattttgctaccaacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAAGCCAACCGAGACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCG
species | Zea mays |
transcript | GRMZM2G108829_T03 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|86469589|gb|DY235959.1|DY235959
genomic: CGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: CATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|78078782|gb|DV507194.1|DV507194
genomic: CATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|60349468|gb|DN216441.1|DN216441
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAEST: gi|211262786|gb|FL340148.1|FL340148
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAA
EST: CGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|84980182|gb|DW530531.1|DW530531
genomic: CGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|78022750|gb|DV491137.1|DV491137
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|211188910|gb|FL465389.1|FL465389
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: CGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|40334857|gb|CK368927.1|CK368927
genomic: CGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: AATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|37378370|gb|CF625872.1|CF625872
genomic: AATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: AAAT-GTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|5770191|gb|AI973365.1|AI973365
genomic: AAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|211496287|gb|FL041699.1|FL041699
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|32870331|gb|CF010013.1|CF010013
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|211308763|gb|FL367424.1|FL367424
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: CGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|5325074|gb|AI783265.1|AI783265
genomic: CGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|5846886|gb|AI999969.1|AI999969
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|87155121|gb|DY399910.1|DY399910
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|15215165|gb|BI431185.1|BI431185
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCCCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAEST: gi|60358960|gb|DN225933.1|DN225933
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
EST: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTG GTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
genomic: GAAATCTCATAGCAATGCATCCGCAAAATTAAATGGTTTATCTAAGACTGgtgcgtgtct ... aacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGA
caagcaagatttatagggtttagtttgattgtctattttgctaccaacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAAGCCAACCGAGACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCG
gtttgat putative branch site (score: 5)
aagatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgtcttatctgttttaattgggctggagcaagcaagatttatagggtttagtttgattgtctattttgctaccaacattacagGTGTACAAAGAAAACTTAATTTGGATCGTCAGCCATCCCAAAAGGGTATGAAGCCAACCGAGACTAGCAATAAACTAACTACGAATCGGGTACCAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC