1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgtaccctatgtgcaaggattaaatatttctttcctcctttttcccctgagaacatgcaatgcaatgtattgggtttgtttggtttcaagttgtttcttgtacatggaacccctttcgcctcttccattaaaatatttattcctctatgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTGGATGTTCTGTCCAGAACCAAGCCTAAAGAAGCAAACGAGCTTATTTCT
species | Zea mays |
transcript | GRMZM2G096553_T02 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATGAAAGGTGGTTACCGTCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTEST: gi|60347237|gb|DN214210.1|DN214210
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTEST: gi|86465812|gb|DY232185.1|DY232185
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTEST: gi|13149317|gb|BG319639.1|BG319639
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTEST: gi|60397731|gb|DN230547.1|DN230547
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTEST: gi|60349430|gb|DN216403.1|DN216403
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTEST: gi|71773678|gb|DR971575.1|DR971575
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTEST: gi|6031366|gb|AW076223.1|AW076223
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
acatggaacccctttcgcctcttccattaaaatatttattcctctatgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTGGATGTTCTGTCCAGAACCAAGCCTAAAGAAGCAAACGAGCTTATTTCT
ttcctctat CT-rich tract
attaaaatatttattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaccctatgtgcaaggattaaatatttctttcctcctttttcccctgagaacatgcaatgcaatgtattgggtttgtttggtttcaagttgtttcttgtacatggaacccctttcgcctcttccattaaaatatttattcctctatgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTTGGATGTTCTGTCCAGAACCAAGCCTAAAGAAGCAAACGAGCTTATTTCT
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