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gtcagtaccttttgtcatatgtttcttgttctgtggaaaaattggaattgaaccaacatgggattcttttgtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGG
species | Zea mays |
transcript | GRMZM2G081682_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|211073602|gb|FL380705.1|FL380705
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGGEST: gi|5762062|gb|AI967110.1|AI967110
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|24764290|gb|CA399456.1|CA399456
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|211046951|gb|FL455967.1|FL455967
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGGEST: gi|6095640|gb|AW120307.1|AW120307
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGCCTTGCACCTGGTGGTTTCANACTTTAATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|4688570|gb|AI637240.1|AI637240
genomic: GGTGGACTTGCACCTGGTGGTTTCA-ACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCNCCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|26559536|gb|CA831771.1|CA831771
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGG-GGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|9794851|gb|BE553159.1|BE553159
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: TGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|32916469|gb|CF021281.1|CF021281
genomic: TGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|6194746|gb|AW146850.1|AW146850
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|87155905|gb|DY400694.1|DY400694
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|211046948|gb|FL455964.1|FL455964
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGGEST: gi|7145170|gb|AW506651.1|AW506651
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|21389890|gb|BQ527939.1|BQ527939
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GTTAAGAATGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|211046950|gb|FL455966.1|FL455966
genomic: GTTAAGAATGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGGEST: gi|32866939|gb|CF006621.1|CF006621
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|33104022|gb|CF063982.1|CF063982
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTEST: gi|74232803|gb|DT640717.1|DT640717
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGT
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|60358930|gb|DN225903.1|DN225903
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|22715090|gb|BU197572.1|BU197572
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|22715088|gb|BU197571.1|BU197571
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCCCCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|60398484|gb|DN231300.1|DN231300
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|211313620|gb|FL416741.1|FL416741
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|32909378|gb|CF014190.1|CF014190
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|31250143|gb|CD219167.1|CD219167
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|21331635|gb|BQ487016.1|BQ487016
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACCTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|76014001|gb|DT941171.1|DT941171
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|211371193|gb|FL385803.1|FL385803
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGEST: gi|211434578|gb|FL418942.1|FL418942
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
ttgttctgtggaaaaattggaattgaaccaacatgggattcttttgtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGG
ttcttttgt CT-rich tract
aaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaccttttgtcatatgtttcttgttctgtggaaaaattggaattgaaccaacatgggattcttttgtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT