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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctgcccctttgtttgcgcttattacctgcgtctgtgtgtgcctgaatggtcatatgtttctcagcgcatatttgtgctctgttttcggtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT

Basic information

species Zea mays
transcript GRMZM2G077299_T01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077299_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os11g03730.3 (Oryza sativa), 3'ss of exon 17
gtaaatctgcccctttgtttgcgcttattacctgcgtctgtgtgtgcctgaatggtcatatgtttctcagcgcatatttgtgctctgttttcggtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT
                                 |          |  |||| |  | |   | |     || |||||   || |||  |   | ||  | | |||    ||||||  | || | |  |     ||||   |   ||||||||| || || || ||| | ||   |||||| |||||||||||||| |||||||| ||||||| ||| |||  ||| |||||||| || || || ||||
---------------------------------gtaagcaaacatttctgacttcttactggatgtaatgcacatatcaatg-tctagtagagtttgtggttttggtcatctgaagccaaagctttgctcatgacaac--caatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCGCTTGCCCAGT

upper sequence: GRMZM2G077299_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 3'ss of exon 16
gtaaatctgcccctttgtttgcgcttattacctgcgtctgtgtgtgcctgaatggtcatatgtttctcagcgcatatttgtgctctgttttcggtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT
                                 |          |  |||| |  | |   | |     || |||||   || |||  |   | ||  | | |||    ||||||  | || | |  |     | ||   |   ||||||||| || || || ||| | ||   |||||| |||||||||||||| |||||||| ||||||| ||| |||  ||| |||||||| || || || ||||
---------------------------------gtaagcaaacatttctgatttcttactggatgtaatgcacatatcaatg-tctagtagagtttgtggttttggtcatctgaagccaaagctttgctcatgataac--caatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCGCTTGCCCAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32832928|gb|CD972606.1|CD972606
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32915958|gb|CF020770.1|CF020770
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32866815|gb|CF006497.1|CF006497
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|12045666|gb|BF727805.1|BF727805
EST:     AAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATTTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: AAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32834805|gb|CD974483.1|CD974483
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32832616|gb|CD972294.1|CD972294
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32838656|gb|CD978334.1|CD978334
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32846404|gb|CD986085.1|CD986085
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGTGTAA-GAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGT
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCG-GTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGT
EST: gi|32866647|gb|CF006329.1|CF006329
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32915959|gb|CF020771.1|CF020771
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|213175520|gb|FM193176.1|FM193176
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|31351830|gb|CD436187.1|CD436187
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32867628|gb|CF007310.1|CF007310
EST:     GTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: GTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32836113|gb|CD975791.1|CD975791
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAG
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAG
EST: gi|32846779|gb|CD986460.1|CD986460
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32833806|gb|CD973484.1|CD973484
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32846254|gb|CD985935.1|CD985935
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|78108891|gb|DV527308.1|DV527308
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32847472|gb|CD987153.1|CD987153
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|74232032|gb|DT639946.1|DT639946
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32846575|gb|CD986256.1|CD986256
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGC
EST: gi|71769432|gb|DR967369.1|DR967369
EST:     TCACATCAGCAGATGTGAGGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATTTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32847067|gb|CD986748.1|CD986748
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGC
EST: gi|32833492|gb|CD973170.1|CD973170
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32833419|gb|CD973097.1|CD973097
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32866646|gb|CF006328.1|CF006328
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32832289|gb|CD971967.1|CD971967
EST:     TCACATCAGCAGATGTGATGGATGAAAACTNCTTCAGCAACCCAACCAAG                         GTTGTGCCG-TAAAGAGCGATCT
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCT
EST: gi|32834130|gb|CD973808.1|CD973808
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32847619|gb|CD987300.1|CD987300
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32847649|gb|CD987330.1|CD987330
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGT
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGT
EST: gi|32846820|gb|CD986501.1|CD986501
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: gi|32832861|gb|CD972539.1|CD972539
EST:     TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG                         GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 64

AAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 67

AAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT


Block sizes: 45 (upstream exon), 46 (downstream exon)
Score: 14

AAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 567

AAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT
                            acctgac  putative branch site (score: 567)
                                       aacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatctgcccctttgtttgcgcttattacctgcgtctgtgtgtgcctgaatggtcatatgtttctcagcgcatatttgtgctctgttttcggtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCACGCTGGCTCCTCGCTCCTTCAGCTCGTTCGATCTCGCCCTGGCTCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC