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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcttctcaattttattgcatgttgcataatgcatagttacgagttataatgtttttggtccttgcatggcatgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCATTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCT

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 17
lower sequence: GLYMA03G35020.1 (Glycine max), 3'ss of exon 17
gttagtcttctcaattttattgcatgttgcataatgcatagttacgagttataatgtttttggtccttgcatggcatgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCATTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCT
  || || | |     || |  |||||  ||| |   | || | | | | || || |     ||  ||  ||   |||    | | || |    | |      | ||   | ||| |  | | |     ||| ||||| ||||||||||| |||  ||||  |||||| | ||||    |  |||| ||||||||||| || |||||||||||| | |||||||||||| |
-gtaatcatatttgacttttgtcatgt--cattacttagagattc-aataatgatatgaccagttgttagattttatgttatcaagttaagtt-tagcattgctcattcattgttgctctcttc-----agAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32836879|gb|CD976557.1|CD976557
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32934500|gb|CF039312.1|CF039312
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTC-
EST: gi|60338294|gb|DN205267.1|DN205267
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32837113|gb|CD976791.1|CD976791
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32920624|gb|CF025436.1|CF025436
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAAGTCTTCCAAATGGCTCCGTC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTC-AAAGTCTTCCAAATGGCTCCGTC
EST: gi|60394366|gb|DN227236.1|DN227236
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|60345781|gb|DN212754.1|DN212754
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|211026372|gb|FL004586.1|FL004586
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAATTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32864974|gb|CF004656.1|CF004656
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32930900|gb|CF035712.1|CF035712
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGT-C
EST: gi|32837751|gb|CD977429.1|CD977429
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32921787|gb|CF026599.1|CF026599
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAAGTCTTCCAAATGGCTCCGTC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTC-AAAGTCTTCCAAATGGCTCCGTC
EST: gi|32931179|gb|CF035991.1|CF035991
EST:     AGCAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32933816|gb|CF038628.1|CF038628
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGT-C


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCATTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCT
    gcctaat  putative branch site (score: 3)
                                     tttcatttt  putative PPT
                                     tttcatttta  TA-rich tract