1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...ttatgtgaatgccaccatagaattcctttattccttggttttaccagtttttgtttgtattggtataatgatgtgaatgaggttctcacctgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACTGTATGAATGACCCTAGTCCTACTGTTCATGGACTGCCAACCAGTAGCT
species | Zea mays |
transcript | GRMZM2G052880_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG CAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACEST: gi|60345833|gb|DN212806.1|DN212806
genomic: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAGgtataaatca ... tgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
EST: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG CAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACEST: gi|60398850|gb|DN231666.1|DN231666
genomic: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAGgtataaatca ... tgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
EST: GATTTT-CCCTATTTTGGAG CAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACEST: gi|76911270|gb|DV164216.1|DV164216
genomic: GATTTTACCCTATTTTGGAGgtataaatca ... tgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
EST: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG CAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACEST: gi|6827451|gb|AW331094.1|AW331094
genomic: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAGgtataaatca ... tgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
EST: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG CAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACEST: gi|76908403|gb|DV162923.1|DV162923
genomic: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAGgtataaatca ... tgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
EST: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG CAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACEST: gi|211447144|gb|FL470093.1|FL470093
genomic: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAGgtataaatca ... tgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
EST: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAG CAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
genomic: CAGGGGAAGAATCAACATGGGCACTCTCTCGATTTTACCCTATTTTGGAGgtataaatca ... tgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAAC
agtttttgtttgtattggtataatgatgtgaatgaggttctcacctgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACTGTATGAATGACCCTAGTCCTACTGTTCATGGACTGCCAACCAGTAGCT
ttctcac putative branch site (score: 72)
ttctcacctgtcct CT-rich tract
tataatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgtgaatgccaccatagaattcctttattccttggttttaccagtttttgtttgtattggtataatgatgtgaatgaggttctcacctgtcctgcagCAATTGATTGAAAATCTTAGCAAAGGTGAGCTGCCAAAAGATGAATATAACTGTATGAATGACCCTAGTCCTACTGTTCATGGACTGCCAACCAGTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - gtgaatg
- - -tgaatgc