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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctctgttctatatgtttttcattttacacttatcttttaccattgcattgtctaattttcatgttgcagGTGATGGAAATGTACGTGTATGGAAAAATTTTACTCAAAAGGGAGGACAAAAACTTGTAACGGCTTTCTCATCCGTTCAGGGACATCGAACTGCTGGTCG

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 17
gtatgcctctgttctatatgtttttcat-tttacacttatcttttaccattgcattgtctaa-----ttttcatgttgcagGTGATGGAAATGTACGTGTATGGAAAAATTTTACTCAAAAGGGAGGACAAAAACTTGTAACGGCTTTCTCATCCGTTCAGGGACATCGAACTGCTGGTCG
||||  ||||  ||| |||||||||  | ||  || || | || |||||||    | | ||      ||||||| ||| ||||||||||||||| ||  |||||| ||| | |||||||||||||||||||||||||||||| ||||||||||| ||||| ||  |||||| |||||||||
gtatatctcttatctttatgttttttctgttctcatttgttttgtaccattttgatatgtattttttttttcatattgtagGTGATGGAAATGTCCGCATATGGAGAAACTATACTCAAAAGGGAGGACAAAAACTTGTAACTGCTTTCTCATCAGTTCAAGGCTATCGAAGTGCTGGTCG

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 18
gtatgcctctgttctatatgtttttcat-tttacacttatcttttaccattgcattgtctaa-----ttttcatgttgcagGTGATGGAAATGTACGTGTATGGAAAAATTTTACTCAAAAGGGAGGACAAAAACTTGTAACGGCTTTCTCATCCGTTCAGGGACATCGAACTGCTGGTCG
||||  ||||  ||| ||| |||||  | ||  || || | ||||||||||    | | ||      ||||||| ||| ||||||||||||||| ||  |||||| ||| | |||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  |||||| |||||||||
gtatatctcttatctttatattttttctgttctcatttgttttttaccattttgatatgtattttttttttcatattgtagGTGATGGAAATGTCCGCATATGGAGAAACTATACTCAAAAGGGAGGACAAAAACTTGTAACTGCTTTTTCATCAGTTCAAGGCTATCGAAGTGCTGGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcattttacacttatcttttaccattgcattgtctaattttcatgttgcagGTGATGGAAATGTACGTGTATGGAAAAATTTTACTCAAAAGGGAGGACAAAAACTTGTAACGGCTTTCTCATCCGTTCAGGGACATCGAACTGCTGGTCG
                                   gtctaat  putative branch site (score: 3)
                                         ttttcat  CT-rich tract
               ttatctttta  TA-rich tract