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gtaattaactaataatttgcctgtcttagtagtgtggccttttcatttatctgatgggaattgctacccttgtatagttaaacaacatcctctacaaaaaagttaaataactctgctgttggttggtctcaccttttgtggctgttgcgaaaacatactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG
species | Zea mays |
transcript | GRMZM2G047894_T03 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|78021557|gb|DV489944.1|DV489944
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|71428422|gb|DR809472.1|DR809472
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|78022411|gb|DV490798.1|DV490798
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|32934739|gb|CF039551.1|CF039551
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTCGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|37387638|gb|CF631017.1|CF631017
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|37391643|gb|CF633065.1|CF633065
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTT-CTTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|71325384|gb|DR799369.1|DR799369
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTTTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|18385140|gb|BM418339.1|BM418339
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|17970259|gb|BM277022.1|BM277022
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|24763373|gb|CA398549.1|CA398549
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|12968368|gb|BG265314.1|BG265314
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|5296286|gb|AI783056.1|AI783056
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCATTCATAGTTGGTGGGATTACCGCGACAACTEST: gi|113702249|gb|EE679753.1|EE679753
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTEST: gi|32850672|gb|CD990353.1|CD990353
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
EST: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCG TATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
genomic: TCAGCCAAGGCAGCTCTTCTCCTTTTCATAATGGTGTTGATTCTTCTTCGgtaattaact ... catactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACT
aactctgctgttggttggtctcaccttttgtggctgttgcgaaaacatactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG
aaaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaactaataatttgcctgtcttagtagtgtggccttttcatttatctgatgggaattgctacccttgtatagttaaacaacatcctctacaaaaaagttaaataactctgctgttggttggtctcaccttttgtggctgttgcgaaaacatactgcagTATCTGCCGGTGGCTTCAGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG