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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtcctcttacacttgctcttcttagatctatattttgttttggcatctgattttatgggcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGATGGTACTTGACACACATGGTGAAGTTTTCATTTGGATTGGTCAGTATG

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 17
lower sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 17
---------------------------gtcggtcctcttacacttgct------cttcttagatctatattttgttttggcatctgattttatgggcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGATGGTACTTGACACACATGGTGAAGTTTTCATTTGGATTGGTCAGTATG
                           || |    ||  ||   ||||      ||| | ||   | | | |  | |     | |  || ||| |   | |||||||    ||| | | ||||||||| ||||||||||||||||| ||||| ||  || | |||||||| ||    ||||| ||  ||||||||||||||| ||
gtgagtttgtgactgcaacttcattatgtggactttcacactactgctaggaaacttgtcagcagtgtttgtcttctaaatctattcttatattgtactcttcagGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACAGAAGATATCCTGATCCTTGACACGCACACAGAAGTGTTTGTTTGGATTGGTCAGTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439549|gb|DR820599.1|DR820599
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|101399213|gb|EB821480.1|EB821480
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106291|gb|FL022809.1|FL022809
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTC
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTC
EST: gi|211106290|gb|FL022808.1|FL022808
EST:     CTCATTCAANAACGGGAGACTGGAG                         GGTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAA
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAA
EST: gi|211106292|gb|FL022810.1|FL022810
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211541598|gb|FL022801.1|FL022801
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106297|gb|FL022815.1|FL022815
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|5816386|gb|AI987302.1|AI987302
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|13562200|gb|BG550420.1|BG550420
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTTCTGAGATCTTCAACTTTTCTCAAGATGATTTGGTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|93281335|gb|EB673599.1|EB673599
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106298|gb|FL022816.1|FL022816
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106296|gb|FL022814.1|FL022814
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTT
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTT
EST: gi|211541599|gb|FL022802.1|FL022802
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcttcttagatctatattttgttttggcatctgattttatgggcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGATGGTACTTGACACACATGGTGAAGTTTTCATTTGGATTGGTCAGTATG
                               atctgat  putative branch site (score: 4)
                                              cttattc  putative PPT
            atctatattttgtttt  TA-rich tract