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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattactggtaaccacaaaattctaagaatatctgcaagcatgatgtaatcgatccttgtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG

Basic information

species Zea mays
transcript GRMZM2G030422_T01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156341|gb|DY401130.1|DY401130
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|211268556|gb|FL032964.1|FL032964
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|32793640|gb|CD945876.1|CD945876
EST:     AAAATCGGTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCTTTGACTGCTGCGGCAAATGCAGGTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|22490238|gb|BU050161.1|BU050161
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|211270985|gb|FL032966.1|FL032966
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|31360139|gb|CD444496.1|CD444496
EST:     AAAATCGTTCTTTTGATGCTTCTTGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|87152395|gb|DY397184.1|DY397184
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|211270984|gb|FL032965.1|FL032965
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|26559138|gb|CA831373.1|CA831373
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTG
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTG
EST: gi|19058659|gb|BM737326.1|BM737326
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAAG
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGC-AG
EST: gi|22520900|gb|BU079711.1|BU079711
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|31356149|gb|CD440506.1|CD440506
EST:     AAAATCGTTCTTTTGATGCTTCTTGCAATGCATCTGAGGCTGAAACAAAG                         CCTCTAATAAATCCCTTGACTG
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaaaattctaagaatatctgcaagcatgatgtaatcgatccttgtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG
                                        tccttgttt  CT-rich tract
     aattctaagaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattactggtaaccacaaaattctaagaatatctgcaagcatgatgtaatcgatccttgtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATAACTGCAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT