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...aaagcttaacacagtgatgaataatctgatcatgacttatgcttagagtttgttcttgaatttttgtctatccattctgattctggactgtttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACAGGCTGGAACAAGGGCAAATCAGCAACTTTCCTGCTGGGTTGTAGGGCC
species | Zea mays |
transcript | GRMZM2G030144_T02 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGGGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|91876800|gb|EB406757.1|EB406757
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|113701558|gb|EE679062.1|EE679062
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|31362862|gb|CD447219.1|CD447219
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|60345980|gb|DN212953.1|DN212953
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|71433259|gb|DR814309.1|DR814309
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGGGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|213178150|gb|FM186361.1|FM186361
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|91876799|gb|EB406756.1|EB406756
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACEST: gi|88751809|gb|DY535950.1|DY535950
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
EST: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAG AAACCACTTGCAATGCGTATCCAGATGTCTTACAAAGTGAATGGAGAGGAC
genomic: ATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATGGCCAGgttattaaag ... tttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGAC
gagtttgttcttgaatttttgtctatccattctgattctggactgtttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACAGGCTGGAACAAGGGCAAATCAGCAACTTTCCTGCTGGGTTGTAGGGCC
ttctgat putative branch site (score: 36)
tttgcctc putative PPT
ttgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcttaacacagtgatgaataatctgatcatgacttatgcttagagtttgttcttgaatttttgtctatccattctgattctggactgtttgcctcagAAACCACTTGCAATGCGTATCCGGATGTCTTACAAAGTGAATGGTGAGGACAGGCTGGAACAAGGGCAAATCAGCAACTTTCCTGCTGGGTTGTAGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA