1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagcaaccgtcttacacgtcaaatgaaatattatgtcatgaacgattttaacgcagaccagtgtttgtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTTGAAGAGTTAGGCCGGAGTGGTTCTACATTTCTGTGCCGCGAACGCAAC
species | Zea mays |
transcript | GRMZM2G017086_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|211283634|gb|FL461525.1|FL461525
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAATCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|5871756|gb|AW018227.1|AW018227
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|5932702|gb|AW057063.1|AW057063
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCEST: gi|6342705|gb|AW165529.1|AW165529
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGC
EST: GGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|13316051|gb|BG410498.1|BG410498
genomic: GGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|4572742|gb|AI586391.1|AI586391
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32930058|gb|CF034870.1|CF034870
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|33098002|gb|CF057962.1|CF057962
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGGGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|33094822|gb|CF054816.1|CF054816
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|13316052|gb|BG410499.1|BG410499
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|6056638|gb|AW091043.1|AW091043
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|12968041|gb|BG264988.1|BG264988
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|31363376|gb|CD447733.1|CD447733
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAATCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|33093667|gb|CF053661.1|CF053661
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|5846961|gb|AW000040.1|AW000040
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32930721|gb|CF035533.1|CF035533
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32866634|gb|CF006316.1|CF006316
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32942933|gb|CF047752.1|CF047752
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|31910881|gb|CD651645.1|CD651645
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATGCAAAGCCCGCATGGCGGAGTEST: gi|67013124|gb|CO441873.1|CO441873
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|5901176|gb|AW042276.1|AW042276
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAAC-ATCTGGTGGAG GTGACTGGCACATGGCTEST: gi|32933054|gb|CF037866.1|CF037866
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32932882|gb|CF037694.1|CF037694
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|5296339|gb|AI783109.1|AI783109
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTNTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATEST: gi|13177837|gb|BG349020.1|BG349020
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTAT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32934559|gb|CF039371.1|CF039371
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|16378498|gb|BI992465.1|BI992465
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|60352250|gb|DN219223.1|DN219223
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|12968042|gb|BG264989.1|BG264989
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|50332355|gb|CO527481.1|CO527481
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATTTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32932375|gb|CF037187.1|CF037187
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32930666|gb|CF035478.1|CF035478
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|32944893|gb|CF049712.1|CF049712
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACACGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|31558633|gb|CD527845.1|CD527845
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|74240014|gb|DT647928.1|DT647928
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|33093538|gb|CF053532.1|CF053532
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATCTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|13177836|gb|BG349019.1|BG349019
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTEST: gi|211211022|gb|FL456134.1|FL456134
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAATCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAG-CCGCATGGCGGAGTEST: gi|5919412|gb|AW054509.1|AW054509
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
EST: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAG GTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
genomic: CAACCCAAACATCCGCAAGGAGGAAGACATTTTGAAACTATCTGGTGGAGgtgagcaacc ... gtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGT
aatgaaatattatgtcatgaacgattttaacgcagaccagtgtttgtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTTGAAGAGTTAGGCCGGAGTGGTTCTACATTTCTGTGCCGCGAACGCAAC
ttttaac putative branch site (score: 2)
tttgtct putative PPT
aatattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaaccgtcttacacgtcaaatgaaatattatgtcatgaacgattttaacgcagaccagtgtttgtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGGCGGAGTTGAAGAGTTAGGCCGGAGTGGTTCTACATTTCTGTGCCGCGAACGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA