1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tcctgttttaatctctcaccgtttggtaatttagggattaaatgagactaaaatcaaaccaaacggggcctaagacgacgagtgtgtgtttgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGGTGTCGGAAGGCAGGGTGACCCCGTTCTCGGGCACTTTCAAGGACTACA
species | Zea mays |
transcript | GRMZM2G013890_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGEST: gi|24769470|gb|CA404599.1|CA404599
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|113810056|gb|DW932154.1|DW932154
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: CAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|92088048|gb|EB484279.1|EB484279
genomic: CAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|71307301|gb|DR789831.1|DR789831
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|45567942|gb|CK985824.1|CK985824
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|32836532|gb|CD976210.1|CD976210
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGG-TTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|7216688|gb|AW562810.1|AW562810
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|60341793|gb|DN208766.1|DN208766
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|211142472|gb|FL453924.1|FL453924
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|12970170|gb|BG266849.1|BG266849
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACAATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|7227521|gb|AW566162.1|AW566162
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|22552549|gb|BU102388.1|BU102388
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|60352803|gb|DN219776.1|DN219776
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|5069942|gb|AI737907.1|AI737907
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|76914779|gb|DV165687.1|DV165687
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|67015572|gb|CO444321.1|CO444321
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|78544243|gb|DV621741.1|DV621741
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|84980921|gb|DW531270.1|DW531270
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|5108202|gb|AI739915.1|AI739915
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|7162610|gb|AW520232.1|AW520232
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCNCTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|40336236|gb|CK370306.1|CK370306
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAAGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|211429006|gb|FL174615.1|FL174615
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|93011869|gb|EB637389.1|EB637389
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|6859953|gb|AW355947.1|AW355947
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: ATGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGCGCTGATG GCGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|211429007|gb|FL174616.1|FL174616
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|86472924|gb|DY239294.1|DY239294
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGGTGATG GTGAGTCACGATGAGCATCTTATCACCGGAAGCGTGGACGAGCTTTGGGTGEST: gi|37390519|gb|CF632491.1|CF632491
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|32943068|gb|CF047887.1|CF047887
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|20802514|gb|BQ293564.1|BQ293564
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATAAAAACACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|213187661|gb|FM193141.1|FM193141
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|37377213|gb|CF625190.1|CF625190
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGEST: gi|7304451|gb|AW600390.1|AW600390
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
EST: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATG GTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
genomic: TTGAGGCGCTCATCCAGGGTTTACTCATTTTTCAGGGAGGGGTGCTGATGgtatgatttg ... tgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTG
gactaaaatcaaaccaaacggggcctaagacgacgagtgtgtgtttgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGGTGTCGGAAGGCAGGGTGACCCCGTTCTCGGGCACTTTCAAGGACTACA
gactaaa putative branch site (score: 165)
aaatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctgttttaatctctcaccgtttggtaatttagggattaaatgagactaaaatcaaaccaaacggggcctaagacgacgagtgtgtgtttgcattgcagGTGAGTCACGATGAGCATCTTATCACTGGAAGCGTGGACGAGCTTTGGGTGGTGTCGGAAGGCAGGGTGACCCCGTTCTCGGGCACTTTCAAGGACTACA
- ctgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaacca