1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgcgtaccatgcatgcactaagcttgttggtttctgaatggaaggagcgacgtgtggagcttgttctgaaccccaaagcttgctgcttgcagGTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTCACGCTGGCTCCTCACTCCTTCACCGCCTTCGATCTGGCGCTGGCTGAGC
species | Zea mays |
transcript | GRMZM2G006130_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCACGTCTGGCAACGTCATGGACGAGAACTCCTTCAGTAACCCGAACAAG GTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTCEST: gi|6270021|gb|AW157992.1|AW157992
genomic: TCACGTCTGGCAACGTCATGGACGAGAACTCCTTCAGTAACCCGAACAAGgtatgcgtac ... ctgcttgcagGTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTC
EST: TCACGTCTGGCAACGTCATGGACGAGAACTCCTTCAGTAACCCGAACAAG GTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTCEST: gi|211146564|gb|FL325013.1|FL325013
genomic: TCACGTCTGGCAACGTCATGGACGAGAACTCCTTCAGTAACCCGAACAAGgtatgcgtac ... ctgcttgcagGTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTC
EST: TCACGTYTGGCAACGTCATGGACGAGAACTCCTTCAGTAACCCGAACAAG GTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTC
genomic: TCACGTCTGGCAACGTCATGGACGAGAACTCCTTCAGTAACCCGAACAAGgtatgcgtac ... ctgcttgcagGTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgtaccatgcatgcactaagcttgttggtttctgaatggaaggagcgacgtgtggagcttgttctgaaccccaaagcttgctgcttgcagGTTGCGCCGGTGAAAAGCCAGCTGAGCAACGCCGCGGAGCAGATGCAGGTCACGCTGGCTCCTCACTCCTTCACCGCCTTCGATCTGGCGCTGGCTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC