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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggacaggaaaggaggacataaaagctataactaaaaccgctcgctcagctgtactgtcaaatgctaatatttaatattatatatgtgaaacagtaaggaattgtcttaggaactgaagcatattcattctcccattttgctacagTCTGTGAAGTTGCTTTCTACAATGGCTGCAATTCGGTTGGAGGAGGATGGTGATAACATTGAGAACACTCTTTCCCTTGCTCTTGTTGACACTTCAAGAC

Basic information

species Zea mays
transcript AC196426.3_FGT007
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC196426.3_FGT007 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os01g39310.1 (Oryza sativa), 3'ss of exon 18
gtgtggacaggaaaggaggacataaaagctataactaaaaccgctcgctcagctgtactgtcaaatgctaatatttaatattatatatgtgaaacagtaaggaattgtcttaggaactgaagcatattcattctcccattttgc--tacagTCTGTGAAGTTGCTTTCTACAATGGCTGCAATTCGGTTGGAGGAGGATGGTGATAACATTGAGAACACTCTTTCCCTTGCTCTTGTTGACACTTCAAGAC
                                                      ||| ||||||||||||||||       | | ||| |||||||  || | ||||  |    |||| |  |||   | ||||||  || |||  |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||  |||| |
------------------------------------------------------gta-tgtcaaatgctaatatcg-----tgtctatttgaaacacaaatggattggttctataactaatccatcaac-ttctccatttctgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTGACAACATTGAGAACACCCTGTCCCTTGCTCTAGTTGACACAGCAAGGC

upper sequence: AC196426.3_FGT007 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os01g39310.1 (Oryza sativa), 3'ss of exon 17
gtgtggacaggaaaggaggacataaaagctataactaaaaccgctcgctcagctgtactgtcaaatgctaatatttaatattatatatgtgaaacagtaaggaattgtcttaggaactgaagcatattcattctcccattttgctacagTCTGTGAAGTTG-CTTTCTACAATGGCTGCAATTCGGTTGGAGGAGGATGGTGATAACATTGAGAACACTCTTTCCCTTGCTCTTGTTGACACTTCAAGAC
                                                | ||||| ||   |||||| | || |  |||  ||| | | |    |||  |  |||||  | |  |||   |   |  |||     | |||  ||        |||| | || ||   | | | |  ||     |||    |||||||     |   ||||   || |||  |      |||                   
-----------------------------------------------gtgagctgcac-accaaatgttgat-tcaaatgatatgtgtttt---cagagactaattggatgaaaaacatgaagGTTCTCAACA--CTATTCAGCC-------GTGATGCTGACTCAATGCCAAGAGTGTGGACCGG--AAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCT-------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtaaggaattgtcttaggaactgaagcatattcattctcccattttgctacagTCTGTGAAGTTGCTTTCTACAATGGCTGCAATTCGGTTGGAGGAGGATGGTGATAACATTGAGAACACTCTTTCCCTTGCTCTTGTTGACACTTCAAGAC
                                ttcattctcccatttt  CT-rich tract
                             atattcatt  TA-rich tract