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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgctgtattcactactggttttgtttatatgtgttgtcaatggaactctgtaaactatctattttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCAATAACAAGTGCAGTACTTTATAACAAG

Basic information

species Zea mays
transcript GRMZM5G870572_T03
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G870572_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os08g25060.1 (Oryza sativa), 3'ss of exon 16
-------------gtgagatgctgtattcactactggttttgtttatatgtgtt--gtcaatggaactctgta------aactatctatt-----------ttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCAATAACAAGTGCAGTACTTTATAACAAG
              | |  | ||||| | | || |   |   ||||| ||| ||  ||   |      |||||      || ||  ||||           |||| |||| ||| | ||||||||||||||  | |  |||||||||||||| ||||||||||||| | |||| |||||||| |||
gtgagatgctgacttcattttctgtactgaatattttctgcatttatttgttttatgttttttagttcctgtattacagaattacttattgtaaactctgtttcttagCACTGGGCAGCTATCCAGGAATTATTGCAGCATTTTTGGTCATCATATCCAATAACAACTTCAGTTCTTTATAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148959669|gb|EE010942.2|EE010942
EST:     AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT                         CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: gi|29946463|gb|CB816162.1|CB816162
EST:     AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT                         CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: gi|89247122|gb|DY618908.1|DY618908
EST:     AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT                         CATGGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATTGTATCCA
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: gi|74239224|gb|DT647138.1|DT647138
EST:     GTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT                         CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
genomic: GTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: gi|71301572|gb|DR786840.1|DR786840
EST:     AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT                         CATTGGACGGCTATCCAGGAATTGCTTCGCCATTTTTGGTCATCGTATCCA
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: gi|24763305|gb|CA398481.1|CA398481
EST:     TTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT                         CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATGGTATCCA
genomic: TTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttgtttatatgtgttgtcaatggaactctgtaaactatctattttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCAATAACAAGTGCAGTACTTTATAACAAG
                                       ctatctattttctc  CT-rich tract
                                   taaactatctatttt  TA-rich tract