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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcttttgaaaaggcatcattttctcatgaggctgaagtctgttagtaatttattctgtttcctcctagGTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAG

Basic information

species Zea mays
transcript GRMZM5G851815_T02
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G851815_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os08g32630.5 (Oryza sativa), 3'ss of exon 15
-------------------------------------gtaggcttttgaaaaggcatcattttctcatgaggctgaagtctgttagtaatttattctgtttcctcctagGTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAG
                                      | |  |||   |||      ||   ||     ||   | |  | |||    |  ||    | |     |||| |||||  |||||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||| |||| ||| || || ||||| ||
gtagactcttaaaaaacattcaagttatttttctaactttgattttcagaaacttcagataagctatgctggtcaatggattttatc--tccatctcttcttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191425|gb|FL472422.1|FL472422
EST:     GGCTAGTAATGATCAGTAGACCACAAATTTTACCTTCCATATTTAAGCAG                         GTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGT
genomic: GGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAGgtaggctttt ... ttcctcctagGTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGT
EST: gi|211191424|gb|FL472421.1|FL472421
EST:     GGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG                         GTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGT
genomic: GGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAGgtaggctttt ... ttcctcctagGTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcattttctcatgaggctgaagtctgttagtaatttattctgtttcctcctagGTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAG
                                   tttattctgtttcctc  CT-rich tract
                          tgttagtaatttatt  TA-rich tract