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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttgattggattcataagccattctttactttgtatgaattcctgccttgaacttgcccttttattttctagGTCTAATAGGCCTATAAATGAAACTCAAAATCCAGTAGAGGTTGTGAGGCCTTGTGGTGCATGCAATGGATCTGAAATGTTGCTTAAGCGAAGGGCG

Basic information

species Zea mays
transcript GRMZM2G470438_T02
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166440307|gb|EG066091.1|EG066091
EST:     AGGGTGAAGAAAGCAAAACTCCTTGATGCAATGGGGTCATTCTTTGCAAG                         GTCTAATAGGCCTATAAATGAAACTCAAAATCCAGTAGAGGTTGTGAGG
genomic: AGGGTGAAGAAAGCAAAACTCCTTGATGCAATGGGGACATTCTTTGCAAGgtgtttgatt ... tattttctagGTCTAATAGGCCTATAAATGAAACTCAAAATCCAGTAGAGGTTGTGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccattctttactttgtatgaattcctgccttgaacttgcccttttattttctagGTCTAATAGGCCTATAAATGAAACTCAAAATCCAGTAGAGGTTGTGAGGCCTTGTGGTGCATGCAATGGATCTGAAATGTTGCTTAAGCGAAGGGCG
                                   cttgcccttttatttt  CT-rich tract
                                          ttttattttcta  TA-rich tract