1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtggggacatgatgtccttgaaaataccctcgtatcgtgctcgtaactgacttttagccgttgcttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGATGTATTTATCTCTTCATTTCCTTCTTAAAGTTTAGCAAGTCGGGCTCA
species | Zea mays |
transcript | GRMZM2G460078_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|5847518|gb|AW000597.1|AW000597
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|87153333|gb|DY398122.1|DY398122
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTTGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|32945399|gb|CF050218.1|CF050218
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|32867326|gb|CF007008.1|CF007008
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|166631378|gb|EG255927.1|EG255927
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|32940106|gb|CF044925.1|CF044925
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|37385309|gb|CF629791.1|CF629791
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|17921701|gb|BM259352.1|BM259352
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTTGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|37377992|gb|CF625646.1|CF625646
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|37392249|gb|CF633373.1|CF633373
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|18177865|gb|BM379075.1|BM379075
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CACCAAGACTATACTTGTGGGATTCTCTTCCTCGAAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCAGGTGTATAGEST: gi|91049610|gb|EB160028.1|EB160028
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGCGTATAGEST: gi|93012881|gb|EB638401.1|EB638401
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTTTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|211208064|gb|FL437175.1|FL437175
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|17970088|gb|BM276854.1|BM276854
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTTGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGEST: gi|71533933|gb|DR784692.1|DR784692
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
tgaaaataccctcgtatcgtgctcgtaactgacttttagccgttgcttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGATGTATTTATCTCTTCATTTCCTTCTTAAAGTTTAGCAAGTCGGGCTCA
aactgac putative branch site (score: 2)
cttatttc putative PPT
ttatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggacatgatgtccttgaaaataccctcgtatcgtgctcgtaactgacttttagccgttgcttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAGATGTATTTATCTCTTCATTTCCTTCTTAAAGTTTAGCAAGTCGGGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG