Sequence
atgc intronic sequence ATGC exonic sequencegttaacacttaatttcaccataatctgtagaatcttgaatgcatatctgtttgattcctgagagtgtttggttttatgtgctatctatttaccatctcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 15
------------------------------------------------------------gttaacacttaatttcaccataatctgtagaatcttgaatgcatatctgtttgattcctgagagtgtttggttttatgtgctatctatttaccatctcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
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gtatttactcttttcccttttagattctaaagagctccatatttatttattgaactctttgttatcatct--tttctttgtgttgatgaatttcttatatgtatatttattgaactacaaggatcatacaattc------ctgttgatgcattacattatgaatt-tagGTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATGGACAAAGAATTCAA
upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
--gttaacacttaatttcaccataatctgtagaatcttgaatgcatatctgtttgattcctga-gagtgtttggttttatgtgctatct--atttaccatc-tcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
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gtattaactcttt-tcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA07G03890.2 (Glycine max), 3'ss of exon 4
--------------------------------------------------------gttaacacttaatttcaccataatctgtagaat--cttgaatgcatatctgtttgattcctgagagtgtttggttttatgtgctatctatttaccatctcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
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gtatttatacttttcccttttagattcaaaagagctctgtatttatttattgaactctcggtaatcatcttttctttgtcttcatgaatttcttatatgtatatttattgaactacaaggatcatacaattc------ctgttgttgcattacattatggatt-tagGTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATAGACAAAGAATTCAA
upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 15
--gttaacacttaatttcaccataatctgtagaatcttgaatgcatatctgtttgattcctga--gagtgtttggttttatgtgctatct--atttaccatc-tcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
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gtattaactcttt-tcccttctagatttctagtttaaaaaaagaat-tgtgcattctttttaattgaactacgaggatcatgagacatcttgatacataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 15
gttaacacttaat-ttcaccataatctgtagaatcttgaatgcatatctgtttgattcctgagagtgtttggttttatgtgctatctatttaccatctcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
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-gtattgtgtattgtccacccttgtcttgaaagtatttc-catatgtgcagatgatatcc-atttcatggatttcttggagcttttttgttaaataaccatatgttccagGTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAA
upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 15
gttaacacttaatttcaccataatct-gtagaatcttgaatgcatatctgtttgattcctgagagtgtttggttttatgtgctatctatttaccatctcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
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-----------------gtataagagagttgattccaggttgtatttctatatatatgatcttcattctaaggtgca-gtcatataaattgttaatgtgatg-atttcagGTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5895850|gb|AW037096.1|AW037096EST: TTATATACAATAATTCTTCATGGCGCCTGAACTACTGCGTTGGAGGAGAG GTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTT
genomic: TTATATACAATAATTCTTCATGGCGCCTGAACTACTGCGTTGGAGGAGAGgttaacactt ... tgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTT
EST:
gi|160481629|gb|EY254461.1|EY254461EST: TTATATACAATAATTCTTCATGGCGCCTGAACTACTGCGTTGGAGGAGAG GTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTT
genomic: TTATATACAATAATTCTTCATGGCGCCTGAACTACTGCGTTGGAGGAGAGgttaacactt ... tgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctgagagtgtttggttttatgtgctatctatttaccatctcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
tatctattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaacacttaatttcaccataatctgtagaatcttgaatgcatatctgtttgattcctgagagtgtttggttttatgtgctatctatttaccatctcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA