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...gatgggtctgaaattgtttctttttccttagttcgaagatatatcataatcttctacacgctactatatcactgatctatctttcctttttttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG
species | Zea mays |
transcript | GRMZM2G420865_T02 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|78027541|gb|DV495928.1|DV495928
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|37373944|gb|CF623297.1|CF623297
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: TGAAAGGGAGAAGAAACTTTGGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|211352888|gb|FL146172.1|FL146172
genomic: TGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAAGAAEST: gi|211352883|gb|FL146167.1|FL146167
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAA-GAA
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTEST: gi|60396007|gb|DN228877.1|DN228877
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGT
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|4887454|gb|AI677553.1|AI677553
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTCCTAAEST: gi|37398106|gb|CF636362.1|CF636362
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAA
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|40337352|gb|CK371422.1|CK371422
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|31349040|gb|CD433397.1|CD433397
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: CCTGGCTTGCTACTGAAAGGGAGAATAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAEST: gi|211352887|gb|FL146171.1|FL146171
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGA
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCAEST: gi|211352885|gb|FL146169.1|FL146169
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCA
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|4887453|gb|AI677552.1|AI677552
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATEST: gi|33100275|gb|CF060235.1|CF060235
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGAT
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTEST: gi|78090029|gb|DV518403.1|DV518403
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGT
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGEST: gi|60344195|gb|DN211168.1|DN211168
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGG
EST: TTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGEST: gi|60341880|gb|DN208853.1|DN208853
genomic: TTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
EST: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAA GAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
genomic: CCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatat ... tttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAG
ataatcttctacacgctactatatcactgatctatctttcctttttttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG
cactgat putative branch site (score: 3)
ctgatctatctttcct CT-rich tract
tttttttcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgggtctgaaattgtttctttttccttagttcgaagatatatcataatcttctacacgctactatatcactgatctatctttcctttttttcataaagGAATCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGGCCGAAGACCTTCGTCTAAAGGAGAAAAGGAGACGAGAACATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgctact