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gtatgcaacactcattttctctgattcacatatggtgtgtttgtaccatgctaatgtagtaaaatgtgcccctgttactatttgtattttttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAGCTGCCTCAGAAAAGGGAATATCCATACTGGATGCGGAGACATTACAAG
species | Zea mays |
transcript | GRMZM2G361398_T02 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAEST: gi|211173099|gb|FL062288.1|FL062288
genomic: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
EST: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGEST: gi|21760046|gb|BQ635587.1|BQ635587
genomic: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAG
EST: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAEST: gi|211173100|gb|FL062289.1|FL062289
genomic: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
EST: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAEST: gi|60351102|gb|DN218075.1|DN218075
genomic: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
EST: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAEST: gi|78109474|gb|DV527890.1|DV527890
genomic: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
EST: TAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAEST: gi|211173101|gb|FL062290.1|FL062290
genomic: TAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
EST: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAEST: gi|31358706|gb|CD443063.1|CD443063
genomic: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
EST: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAAT GGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
genomic: GTTGGAGCATAAATAATGGTAGTTGTGTGACCTGCGTTAGGGTTTTCAATgtatgcaaca ... ttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCA
ccatgctaatgtagtaaaatgtgcccctgttactatttgtattttttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAGCTGCCTCAGAAAAGGGAATATCCATACTGGATGCGGAGACATTACAAG
tgctaat putative branch site (score: 2)
tttgtattttttcttt putative PPT
ttactatttgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaacactcattttctctgattcacatatggtgtgtttgtaccatgctaatgtagtaaaatgtgcccctgttactatttgtattttttctttgcagGGAGGAGCTACTCGGTTAAGATTTCAACCTCGCCAGGGTAAATATCTGGCAGCTGCCTCAGAAAAGGGAATATCCATACTGGATGCGGAGACATTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC