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...cacgatccagtaaaagaatgtttttatcatagcctctagaatatatatttctttggcagtagaatgattctaatgccttgctatttacaacttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGCTGCCATCACGATGCTGTAATTATACCTTTTGTACATGTATTCCAATCAG
species | Zea mays |
transcript | GRMZM2G353548_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGACTG GTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGCEST: gi|32802428|gb|CD954664.1|CD954664
genomic: CATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGACTGgtatgggact ... cttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGC
EST: CATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGATTG GTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGCEST: gi|32802197|gb|CD954433.1|CD954433
genomic: CATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGACTGgtatgggact ... cttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGC
EST: CATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGACTG GTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGCEST: gi|32789074|gb|CD941310.1|CD941310
genomic: CATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGACTGgtatgggact ... cttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGC
EST: ATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGACCTG GTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGEST: gi|166595626|gb|EG314408.1|EG314408
genomic: ATTAGAACAGATAATTCTCAATGGGCTCTTTCAAGTGCCTTGGGGA-CTGgtatgggact ... cttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGG
EST: TCAATGGGCTCTTTCAAGTGCCTTGGGGACTG GTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGCEST: gi|211327869|gb|FL163545.1|FL163545
genomic: TCAATGGGCTCTTTCAAGTGCCTTGGGGACTGgtatgggact ... cttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGC
EST: CAATGGGCTCTTTCAAGTGCCTTGGGGACTG GTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGC
genomic: CAATGGGCTCTTTCAAGTGCCTTGGGGACTGgtatgggact ... cttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGC
tatttctttggcagtagaatgattctaatgccttgctatttacaacttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGCTGCCATCACGATGCTGTAATTATACCTTTTGTACATGTATTCCAATCAG
tatttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacgatccagtaaaagaatgtttttatcatagcctctagaatatatatttctttggcagtagaatgattctaatgccttgctatttacaacttgatttagGTCTTTGCAGGGGCGGCAGGAGATGTAAATCTACATGGCCACCGTCGTGGCTGCCATCACGATGCTGTAATTATACCTTTTGTACATGTATTCCAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - -aaaagaa
- - - - - - - - - tgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccttgc