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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctagcataaagcttctgcgtcacagaagaataatcccttttaatagcgatggccacattatatattgtaaatctgaaagactcctgattctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATTACCCGATTTATCAGGAACAG

Basic information

species Zea mays
transcript GRMZM2G324540_T01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324540_T01 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 14
cctagcataaagcttctgcgtcacagaagaataatcccttttaatagcgatggccacattatata-ttgtaaatctgaaagactcctgattctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATTACCCGATTTATCAGGAACAG
             ||   |   ||     | |    ||||||  | || |  |  | |   || | || || || ||| |    |    ||  | ||  ||||| ||||||||||| |||||||||   |||||||||||| ||||||| ||||| ||||| ||||| ||||
---------gtattttctcaaaacctgcaagtctgaccttttggt-gcaaatgttataccgtaaacttttatatttgatacctcctctgtttggccttcagGGTTTACCAAGTAGCAAATGTTAAGCTTGAATGGAATCTTGTCAAGACCTTACCAGATTTGTCAGGCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211013333|gb|FL464492.1|FL464492
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|211328788|gb|FL441397.1|FL441397
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|211328787|gb|FL441396.1|FL441396
EST:     ATTTTGATTTTAGTGGAAACTATCCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: AATTTGATTTTAGTGGAAACTAT-CTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|211125230|gb|FL005603.1|FL005603
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|16379531|gb|BI993008.1|BI993008
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|37394216|gb|CF634379.1|CF634379
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|32932206|gb|CF037018.1|CF037018
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|32835196|gb|CD974874.1|CD974874
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|32834072|gb|CD973750.1|CD973750
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|13490540|gb|BG517304.1|BG517304
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|211152716|gb|FL458060.1|FL458060
EST:     TGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: TGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|32931746|gb|CF036558.1|CF036558
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|13490541|gb|BG517305.1|BG517305
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|32939397|gb|CF044216.1|CF044216
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|116828456|gb|EC857640.1|EC857640
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
EST: gi|32835644|gb|CD975322.1|CD975322
EST:     GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAG                         GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT
genomic: GAATTTGATTTTAGTGGAAACTATCTTGCCATTGGTGGTTCAGATATAAGgtatgttcta ... ctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgatggccacattatatattgtaaatctgaaagactcctgattctgtctgtagGGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACATTACCCGATTTATCAGGAACAG
                                     tcctgat  putative branch site (score: 3)
                                           ttctgtct  CT-rich tract
            attatatattgtaaat  TA-rich tract