1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gttcctacagaactttttaactgctatttttattttgtgattcatagacttgtttttagattgatcctgacccctgacactaattttggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGGATCACTTGGATAGGAATTCTCCTGCAAAGCCATCTCCTATACTG
species | Zea mays |
transcript | GRMZM2G316967_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTNGCTAGCATCTCTCCTAACATAGGCCGAATGEST: gi|67029310|gb|CO458059.1|CO458059
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGEST: gi|6021011|gb|AW065939.1|AW065939
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGEST: gi|211179386|gb|FL244890.1|FL244890
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGEST: gi|211179381|gb|FL244885.1|FL244885
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGEST: gi|211181779|gb|FL244892.1|FL244892
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGEST: gi|211181778|gb|FL244891.1|FL244891
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGEST: gi|211181781|gb|FL244894.1|FL244894
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
EST: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAG GTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
genomic: GGCCTCCTTTTGAAGCATTTAGGCCGCAATACGAAGCTTCTTCTATGAAGgttcctacag ... ggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATG
catagacttgtttttagattgatcctgacccctgacactaattttggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGGATCACTTGGATAGGAATTCTCCTGCAAAGCCATCTCCTATACTG
cactaat putative branch site (score: 97)
taattttggattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctacagaactttttaactgctatttttattttgtgattcatagacttgtttttagattgatcctgacccctgacactaattttggatttacagGTCTCAGGTGCTCCTGTTGTTGCTAGCATCTCTCCTAACATAGGCCGAATGGATCACTTGGATAGGAATTCTCCTGCAAAGCCATCTCCTATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG