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...tgtacatgtacttcttatttatcaactgaggtttagaagtatatactgcctgctctgacctccgccctgcacgttctcatatactcaagttactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATACTGACACCATCAATAGCTGGAGCTCTGATGGGTTTTAGTTCGGTCGGTG
species | Zea mays |
transcript | GRMZM2G315931_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTATATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|60395664|gb|DN228534.1|DN228534
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTATATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|33094915|gb|CF054909.1|CF054909
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|78104271|gb|DV522689.1|DV522689
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CATGAAGACGGTGAAGCAAAATCTTTGGGTGGCCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|211347510|gb|FL460342.1|FL460342
genomic: CATGAAGACGGTGAAGCAAAATCTTTGG-TGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTATATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|67017000|gb|CO445749.1|CO445749
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTATATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|50324563|gb|CO519689.1|CO519689
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|86471147|gb|DY237517.1|DY237517
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGAGGATAEST: gi|50324564|gb|CO519690.1|CO519690
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|13249696|gb|BG360601.1|BG360601
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|60397501|gb|DN230317.1|DN230317
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|211347512|gb|FL460344.1|FL460344
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTATATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|12968157|gb|BG265104.1|BG265104
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|12968156|gb|BG265103.1|BG265103
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|89247265|gb|DY619051.1|DY619051
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGAGGATAEST: gi|211170365|gb|FL103274.1|FL103274
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|211347511|gb|FL460343.1|FL460343
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTATATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|211170368|gb|FL103277.1|FL103277
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATAEST: gi|110518276|gb|EE022863.1|EE022863
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
EST: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATT GTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
genomic: CCATGAAGACGGTGAAGCAAAATCTTTGGTGGGCTTTCCTGTATAACATTgtatggttct ... tactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATA
ctgcctgctctgacctccgccctgcacgttctcatatactcaagttactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATACTGACACCATCAATAGCTGGAGCTCTGATGGGTTTTAGTTCGGTCGGTG
ctctgac putative branch site (score: 3)
ttactct putative PPT
tcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacatgtacttcttatttatcaactgaggtttagaagtatatactgcctgctctgacctccgccctgcacgttctcatatactcaagttactctgcagGTTGGACTACCCATTGCTGCTGGAGCATTGCTTCCAGCTACGGGGACGATACTGACACCATCAATAGCTGGAGCTCTGATGGGTTTTAGTTCGGTCGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
-gtacatg
- - - - - - - - - - - - - - - - - - - - - - - tgcctgc