1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtcagtcgcctctgatgctgtcgtgttcatgattccatcgccatcgccgcacttcttaatgatagtagcttatgccgtaacctggagccgggcattgccaactgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTGGAGACGACGATGGTGAACATCCAGGACCTGCCGCTGGAGGCGGTCCTCG
species | Zea mays |
transcript | GRMZM2G178102_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CACAGCGACGCGATACTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTGEST: gi|71310371|gb|DR791491.1|DR791491
genomic: CACAGCGACGCGATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
EST: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTGEST: gi|6021905|gb|AW066833.1|AW066833
genomic: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
EST: GCGACGCGATACTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTGEST: gi|89247875|gb|DY619661.1|DY619661
genomic: GCGACGCGATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
EST: ATACTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTTGCCAACAGCGCCGGCTTCGACATCCTGEST: gi|78024201|gb|DV492588.1|DV492588
genomic: ATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
EST: AAGCACAGCGACGCGATATTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTTGACATCCTGEST: gi|148960629|gb|EE011257.2|EE011257
genomic: AAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
EST: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTGGACATCCTGEST: gi|60341255|gb|DN208228.1|DN208228
genomic: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
EST: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTGEST: gi|148932540|gb|EC876347.2|EC876347
genomic: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
EST: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAG CCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
genomic: TGATGCTGTTCTGGAAGCACAGCGACGCGATACTCTGCTGCTCTCTGAAGgtcagtcgcc ... ctgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTG
taatgatagtagcttatgccgtaacctggagccgggcattgccaactgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTGGAGACGACGATGGTGAACATCCAGGACCTGCCGCTGGAGGCGGTCCTCG
ccgtaac putative branch site (score: 21)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcgcctctgatgctgtcgtgttcatgattccatcgccatcgccgcacttcttaatgatagtagcttatgccgtaacctggagccgggcattgccaactgcttgcagCCGCCGGCTTTCACGCTCAAGTTCGCCAACAGCGCCGGCTTCGACATCCTGGAGACGACGATGGTGAACATCCAGGACCTGCCGCTGGAGGCGGTCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG