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gtaagtcatctagacttttgttcacttcttgtaaaatatcatttacctgttaattctctctgcctttattcattatattcacttcatcatcacagcaatagcaatagtgatagcttatttggtcatgttaacaaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCAGCCATCTATGTCTAGATCGAACCCAAAGGATGCTAAGACTCCAA
species | Zea mays |
transcript | GRMZM2G173700_T03 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCT GCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCAEST: gi|60359739|gb|DN226712.1|DN226712
genomic: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCTgtaagtcatc ... caaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCA
EST: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCT GCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCAEST: gi|24769405|gb|CA404534.1|CA404534
genomic: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCTgtaagtcatc ... caaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCA
EST: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCT GCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCAEST: gi|24768351|gb|CA403480.1|CA403480
genomic: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCTgtaagtcatc ... caaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCA
EST: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCT GCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCAEST: gi|166577801|gb|EG320839.1|EG320839
genomic: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCTgtaagtcatc ... caaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCA
EST: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCT GCATAGATTTCCATCAAGAATAAGCAGGEST: gi|211459827|gb|FK984327.1|FK984327
genomic: GGTGAAACCGAGAATGATAATTCAGCTGCTGAGATGACAGCGGAACGGCTgtaagtcatc ... caaaatgcagGCATAGATTTCCATCAAGAATAAGCAGG
EST: TGATAATTCAGCTGCTGAGATGACAGCGGAACGGCT GCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCA
genomic: TGATAATTCAGCTGCTGAGATGACAGCGGAACGGCTgtaagtcatc ... caaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCA
tcatcacagcaatagcaatagtgatagcttatttggtcatgttaacaaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCAGCCATCTATGTCTAGATCGAACCCAAAGGATGCTAAGACTCCAA
tgttaac putative branch site (score: 68)
ttaacaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcatctagacttttgttcacttcttgtaaaatatcatttacctgttaattctctctgcctttattcattatattcacttcatcatcacagcaatagcaatagtgatagcttatttggtcatgttaacaaaatgcagGCATAGATTTCCATCAAGAATAAGCAGGTTCACTCTCACAAAGAACGGGCAGCCATCTATGTCTAGATCGAACCCAAAGGATGCTAAGACTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG