1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...atttttctcgatctattcatgtggcctgcattatattataaagcaattctctgcatagtctgtcttttgctgttgcgctcacgtgttctctgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAAAGCCAGAAGATTTGATTCTTCATTACAGAGTGGTCCAACCGAGATGAT
species | Zea mays |
transcript | GRMZM2G167999_T02 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|67025265|gb|CO454014.1|CO454014
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|6020795|gb|AW065723.1|AW065723
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|87151860|gb|DY396649.1|DY396649
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|60346411|gb|DN213384.1|DN213384
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|211189104|gb|FL252863.1|FL252863
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: GCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCA-TAAACAAG GTTCTATCACCAGAGAATGAGTTGGGCTACTGTGCGAAEST: gi|4298917|gb|AI438830.1|AI438830
genomic: GCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCA-Ggtaagttctc ... tgtggctcagGTTCTATCACCAGAGA-TGAGTTTGGCTACTGTGCGAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|211234744|gb|FL433588.1|FL433588
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|19436106|gb|BM952516.1|BM952516
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|22491095|gb|BU051018.1|BU051018
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCCCCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAEST: gi|5901405|gb|AW042505.1|AW042505
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST: AGCCATGGCAAAAANCAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
attctctgcatagtctgtcttttgctgttgcgctcacgtgttctctgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAAAGCCAGAAGATTTGATTCTTCATTACAGAGTGGTCCAACCGAGATGAT
cgctcac putative branch site (score: 161)
tgttctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttctcgatctattcatgtggcctgcattatattataaagcaattctctgcatagtctgtcttttgctgttgcgctcacgtgttctctgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAAAGCCAGAAGATTTGATTCTTCATTACAGAGTGGTCCAACCGAGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - attcatg
- - - - - - - - - - - -gcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - ctgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgttg