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gtctgtatagatttgtgcagcttatctcgtgtatagagtaggagaaccatcagcccttacacacaggttacccttgtttccaaactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAATCGTTTGGGTGCCAGAGACAAAGGGAAGAACCCTCGAAGAGATACAATG
species | Zea mays |
transcript | GRMZM2G160460_T02 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAG GTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAAEST: gi|60400681|gb|DN233488.1|DN233488
genomic: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAGgtctgtatag ... aactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAA
EST: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAG GTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAAEST: gi|60350213|gb|DN217186.1|DN217186
genomic: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAGgtctgtatag ... aactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAA
EST: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAG GTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAAEST: gi|5608265|gb|AI901932.1|AI901932
genomic: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAGgtctgtatag ... aactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAA
EST: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAG GTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAAEST: gi|60344421|gb|DN211394.1|DN211394
genomic: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAGgtctgtatag ... aactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAA
EST: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAG GTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAAEST: gi|78121863|gb|DV540247.1|DV540247
genomic: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAGgtctgtatag ... aactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAA
EST: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAG GTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAA
genomic: CTTTGGAATAACAATGACGGCAAATTTGCTGATCAGCTGGAGTGCTGGAGgtctgtatag ... aactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAA
gtaggagaaccatcagcccttacacacaggttacccttgtttccaaactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAATCGTTTGGGTGCCAGAGACAAAGGGAAGAACCCTCGAAGAGATACAATG
cccttac putative branch site (score: 36)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatagatttgtgcagcttatctcgtgtatagagtaggagaaccatcagcccttacacacaggttacccttgtttccaaactgtacagGTACGTTTACCTCCTACATGATTGTGAGTGCCTTCACTCTCGTGTTCGTAATCGTTTGGGTGCCAGAGACAAAGGGAAGAACCCTCGAAGAGATACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA