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gtccatctatacatctgtgtccatcactagtgtagggtagagtcgtatatgaactaccaaaccatgcgacaggttggtgacctttgtttcctaatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCATCCTTTGGGTACCAGAGACGAAGGGAAGAACCCTTGAAGAGATACAGTG
species | Zea mays |
transcript | GRMZM2G160430_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTGAACTGGAGCGCTGCAG GTTCATTTGCCTCCTACATGACGGTGAGTGCTTTGACTCTCGTCTTCGTCAEST: gi|5915334|gb|AW052975.1|AW052975
genomic: CTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCA
EST: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAG GTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCAEST: gi|101387701|gb|EB815865.1|EB815865
genomic: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCA
EST: CTTTGGAATAACAATGACAGCATATTTGCTTCCGAACTGCAGCGCTGCAG GGACATTTGCCTCCTACATEST: gi|37385615|gb|CF629958.1|CF629958
genomic: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCCTCCTACAT
EST: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAG GTACATTTGCCTCCTACATGACGGTGAGTGCTTTGACTCTCGTCTTCGTCAEST: gi|113701345|gb|EE678849.1|EE678849
genomic: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCA
EST: CTTTGGAAT--CAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAG GTACATTTGCCTCCTACATGACGGTGAGTGCTTTGACTCTCGTCTTCGTCAEST: gi|37376279|gb|CF624650.1|CF624650
genomic: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCA
EST: CTTTGGAATAACTATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAG GTACATTTGCCTCCTACATGACGGTGAGTGCTTTGACTCTCGTCTTCGTCAEST: gi|148950293|gb|EC895852.2|EC895852
genomic: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCA
EST: CTTTGGAATAACAATGACAGCAAATTTGCTTTTGAACTGGAGCGCTGCAG GTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTTTCGTTTTCGTCAEST: gi|5846979|gb|AW000058.1|AW000058
genomic: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCA
EST: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAG GTACATTTGCC
genomic: CTTTGGAATAACAATGACAGCAAATTTGCTTCTGAACTGGAGCGCTGCAGgtccatctat ... aatcgtgcagGTACATTTGCC
tatgaactaccaaaccatgcgacaggttggtgacctttgtttcctaatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCATCCTTTGGGTACCAGAGACGAAGGGAAGAACCCTTGAAGAGATACAGTG
tcctaat putative branch site (score: 2)
tttccta CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccatctatacatctgtgtccatcactagtgtagggtagagtcgtatatgaactaccaaaccatgcgacaggttggtgacctttgtttcctaatcgtgcagGTACATTTGCCTCCTACATGATGGTGAGTGCTTTCACTCTCGTCTTCGTCATCCTTTGGGTACCAGAGACGAAGGGAAGAACCCTTGAAGAGATACAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA