1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...cgtagaaagatatactgatggcaaaacatgtcttgatgtaaagaactgatatggactgctttagcaacttgcttatgttgttagctgtattcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGGACTCAAAAAAGGCAAATGGATCAGAAAAAATCTCAAGTCTTGTATTTA
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|78180891|gb|DV551264.1|DV551264
genomic: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|31353959|gb|CD438316.1|CD438316
genomic: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|22491320|gb|BU051243.1|BU051243
genomic: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: GAGAGACATTTTCGTGG-GTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|32847552|gb|CD987233.1|CD987233
genomic: GAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|87151847|gb|DY396636.1|DY396636
genomic: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: GAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|32857965|gb|CD997646.1|CD997646
genomic: GAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|31354322|gb|CD438679.1|CD438679
genomic: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGEST: gi|7031283|gb|AW461021.1|AW461021
genomic: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
EST: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG GAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
genomic: ACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAGgtgtgcataa ... tcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAG
ctgatatggactgctttagcaacttgcttatgttgttagctgtattcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGGACTCAAAAAAGGCAAATGGATCAGAAAAAATCTCAAGTCTTGTATTTA
aactgat putative branch site (score: 499)
ttcattt putative PPT
tattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtagaaagatatactgatggcaaaacatgtcttgatgtaaagaactgatatggactgctttagcaacttgcttatgttgttagctgtattcatttgcagGAGTGCAACCTTGAGGAGGTAGAGGAGGAAGAGCCTTCTAAAAGTTCAAAGGACTCAAAAAAGGCAAATGGATCAGAAAAAATCTCAAGTCTTGTATTTA
- - gaaagata
- - - - - - - ctgatgg
- - - - - - - - - - - - - catgtct
- - - - - - - - - - - - - - - - -tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgta