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...taagtacagaaacatatgttaatttgttgacagacgatgtgatcaaccttgagaaacctatgttggcttctaacattacctactctccttgcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGAAGACGGCTCTCCAGAACCTGGAACAGTTCCAGGAGAAGGCAAAGAAGG
species | Zea mays |
transcript | GRMZM2G136296_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|18163487|gb|BM333326.1|BM333326
genomic: AGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGAEST: gi|67017261|gb|CO446010.1|CO446010
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|4775850|gb|AI664855.1|AI664855
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|60396449|gb|DN229318.1|DN229318
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|211435102|gb|FL442353.1|FL442353
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|32847083|gb|CD986764.1|CD986764
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|211269150|gb|FL294986.1|FL294986
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|37393345|gb|CF633935.1|CF633935
genomic: CAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|40336444|gb|CK370514.1|CK370514
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|78025893|gb|DV494280.1|DV494280
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|5607972|gb|AI901639.1|AI901639
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|32944015|gb|CF048834.1|CF048834
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATACTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|29945603|gb|CB815724.1|CB815724
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|40334952|gb|CK369022.1|CK369022
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: AGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|20802346|gb|BQ293396.1|BQ293396
genomic: AGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTGCCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|211486828|gb|FL010663.1|FL010663
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|108953432|gb|EC364740.1|EC364740
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|33093747|gb|CF053741.1|CF053741
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGGGAGGEST: gi|37382079|gb|CF627962.1|CF627962
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: AGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|5455714|gb|AI833404.1|AI833404
genomic: AGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|15080370|gb|BI389038.1|BI389038
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|32911048|gb|CF015860.1|CF015860
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGEST: gi|60357472|gb|DN224445.1|DN224445
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
accttgagaaacctatgttggcttctaacattacctactctccttgcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGAAGACGGCTCTCCAGAACCTGGAACAGTTCCAGGAGAAGGCAAAGAAGG
ttctaac putative branch site (score: 197)
cctactctccttgc putative PPT
taacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtacagaaacatatgttaatttgttgacagacgatgtgatcaaccttgagaaacctatgttggcttctaacattacctactctccttgcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGAAGACGGCTCTCCAGAACCTGGAACAGTTCCAGGAGAAGGCAAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG