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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG

Basic information

species Zea mays
transcript GRMZM2G128877_T02
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 3'ss of exon 16
atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaat--attagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
               | |   ||       ||  |   ||||||| |  | | || ||  |   | |||| |||||  ||  | |  ||||  ||  |  |||||||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||  |||
--------------gtgagtgttaaacccatttgatagttctactaacctgtgtc-ataatccatattaactaatt--gatcaattctgttgcatgaaacagATATGATAAGTATTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACATTATTCATTTCAACACATTGGCAACCCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA07G00430.1 (Glycine max), 3'ss of exon 17
atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
          ||    |    |  | ||  |||   | ||  ||   ||||     ||| | || ||    |  | |   |  |||| | |   |  |||||||||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||| |||  ||||||||||||
--------gtaagggcccttgtaattgg--ttaacttctttaacatttattatattattgtgttcttatgttggtaccttct-gtgtggct--gtgatagATATGATAAATTTTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA08G23990.1 (Glycine max), 3'ss of exon 17
atactagaccaaaaatcaagattttgggtgttacaattt-tctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
 ||   ||||    |    |   ||   |  |  ||| | | |  |  ||||  |    ||| || ||    |  | |      |||| | |   |  ||||||||| || |||||||| |||||||| || ||||||||||||||||| ||||| || ||| |||  ||||||||||||
gtaagggaccttgtaattgg---ttaacttctttaatatgtattatattattgtttttatttgttcttatgttggtacctttttgtgtggct--gtgatagATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 17
----atactagaccaaa------aatcaagattttgggtgttacaattttc---tactca-tatttctccattttattttttaaataat--tctgacaagtgttgtt-----taatat---------------------tagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
     | | |||  ||       | ||||  ||| |    ||  ||||||    |||| | ||||||   || ||    |||  ||  |  |||   || | || ||     ||||||                      |||||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||| | |  ||||| ||||||
gtaagtcccagattaagtttttgattcaaattttcgtcctttttaatttttgtttacttactatttccttatgttcccctttttatgctggtctagaaattctttttccacttaatatatgtatctcatgtggctgtgacagATATGATAAGTTCTGCCCCTTCTACAAGTCGGTTTGGATGATGCGCAATATTATCCATTTCTATAATTTGGCCAATCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: PP1S44_102V6.1 (Physcomitrella patens), 3'ss of exon 17
----atactagaccaaaaatcaa---gattttgggtgttacaattttctactcatatttctccattt-tattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
      |||   ||   |||  |   |   | | |||| |  ||    |     |  || | ||| |   | | | | ||     || || | || |         || |||||||| || |||||||| || || || || |||||||||||||| ||| | |||||||||||  | || ||||||
cgatgcactttgccttgaatagattgggggtagagtgtcaacataccttgaatgtgattttgcatgtgcgtatctgacatgggcttgtcatgggtggc--------agTTATGATAAATTTTGCCCATTTTATAAGTCGGTGTGGATGATGCGCAACATTGTCCACTTCAACACTCTTGCCAATCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: PP1S10_201V6.1 (Physcomitrella patens), 3'ss of exon 17
atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttat-----tttttaaataattctgacaagtgttgttta---atattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
          |   ||   | | |      || || || |  |       ||  | | | |||     ||| ||   || |||||   | |||  | |    |   || ||||||||||||||||||||||| ||||| || |||||||||||||||||| | ||||| |||||  | || ||||||
--------ttatgcatttcgttataatagattgcagttgtggatgacagcttgcctaatctatggatgtttctatccaagtctgatgtgggttcctcatgggtggcagTTATGATAAGTTCTGCCCATTCTATAAATCAGTATGGATGATGCGCAATATTGTCCACTTTAACACTCTTGCCAATCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 3'ss of exon 17
---------------------atac-tagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatat--tagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
                      |   |||        |   |    ||  | | |  ||| | |   | | ||   | ||| | | |||       |        ||  | |   |  |   || ||||| || ||||||||||||||||| || || ||||||||||| |||||| | |||||||||||  | |||||||||
gtgagctttgttgaaattttgttgtgtaggatgtttgttgggtagatgtttttcattattctgtgtccctgttcgacgattgtgtgtttctccatgtctgattcggtcctctcatacgtgacagTTATGACAAATTCTGCCCATTCTACAAGTCTGTGTGGATGATGCGTAATATTGTCCACTTCAACACTCTTGCAAATCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: EFJ33015 (Selaginella moellendorffii), 3'ss of exon 16
atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
                                              |  | |  |    ||  | ||    ||   || ||||       |       ||||| |||||||| || || |||||||| ||||||||||||||||| || ||  |||| |||  |    || | | ||||
--------------------------------------------gtacgtgttccgggcttgctctt-gtttatcgctaacaa-------tctgctccagATACGATAAGTTTTGTCCGTTCTACAAGTCCGTTTGGATGATGCGAAACATCGTTCATTTCTGCGACCTGTCCACTCAG

upper sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 13
lower sequence: EFJ30330 (Selaginella moellendorffii), 3'ss of exon 17
atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
                                              |  | |  |    ||  | ||    ||   || ||||       |       ||||| |||||||| || || |||||||| ||||||||||||||||| || ||  | || |||  |    || | | ||||
--------------------------------------------gtacgtgttccgggcttgctctt-gtttatcgctaacaa-------tctgctccagATACGATAAGTTTTGTCCGTTCTACAAGTCCGTTTGGATGATGCGAAACATCGTCCATTTCTGCGACCTGTCCACTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929207|gb|CF034019.1|CF034019
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|60338201|gb|DN205174.1|DN205174
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5770168|gb|AI973342.1|AI973342
EST:     CACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: CACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|13149764|gb|BG320086.1|BG320086
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|32831320|gb|CD970998.1|CD970998
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|4646572|gb|AI491316.2|AI491316
EST:     AAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: AAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|32928400|gb|CF033212.1|CF033212
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|32837774|gb|CD977452.1|CD977452
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5296280|gb|AI783050.1|AI783050
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5846764|gb|AI999847.1|AI999847
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|32939925|gb|CF044744.1|CF044744
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGC-CAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|211532168|gb|FL123442.1|FL123442
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTT
EST: gi|211152801|gb|FL123511.1|FL123511
EST:     ACAGCRAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGAWAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5847131|gb|AW000210.1|AW000210
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5804554|gb|AI979524.1|AI979524
EST:     AAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: AAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|33092495|gb|CF052489.1|CF052489
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAAATCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5846817|gb|AI999900.1|AI999900
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5846863|gb|AI999946.1|AI999946
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|67040096|gb|CO466351.1|CO466351
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|149076737|gb|EE165383.2|EE165383
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|32836684|gb|CD976362.1|CD976362
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|83278503|gb|DV942511.1|DV942511
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5343199|gb|AI795384.1|AI795384
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5296225|gb|AI782905.1|AI782905
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|5325051|gb|AI783242.1|AI783242
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|211156008|gb|FL123543.1|FL123543
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|32910829|gb|CF015641.1|CF015641
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: gi|67025855|gb|CO454604.1|CO454604
EST:     ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 235

CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 414

CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 334

CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 397

CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
           attttattttttaaat  TA-rich tract